LOCUS RID70655.1 1216 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2862
PROTEIN_ID RID70655.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02657"
/db_xref="Phytozome:Brara.C02657"
intron_pos 42:0 (1/8)
intron_pos 78:2 (2/8)
intron_pos 137:1 (3/8)
intron_pos 242:1 (4/8)
intron_pos 564:2 (5/8)
intron_pos 800:0 (6/8)
intron_pos 894:2 (7/8)
intron_pos 1117:0 (8/8)
BEGIN
1 MDTISLLCSA EECSIGEEFV EMVSAQLSSG ALGWSRRQLH MLHCFGVLLS SEKIDINSHI
61 RDKESLVCLL VEGLQLPSEE IRGEIFFVLY KFSALQFTEQ DVDGAEILSS LSPKLLSLSL
121 EALAKTQRDE VRLNCIALLT TLAQQGLLAN SRTSPVSSMS LDEVDDDPML TAETVTVRPC
181 LDILFAEAIK GPLLSTDSEV QIKALDLIFH YVSQESVPSK QIEVLVEENV ADYIFEILRL
241 SECKDHVINP CLRVLDLFSL AEHSFRKKLV IGFPSVIQVL HYVGEVPCHP FQVQTLKLVS
301 SCISDFPGIA SSSQVQEVSL VLKMMLERYY SQEMGLFPDA FAIICSVFVS LMKTPSFAET
361 PDVFKSLQDS LRHAVLVCLS LPEKDSTQIS HAVYFLNEVY AYCTSPTSIN NTGCIELRQC
421 VIDVCVSHLL PWFLSDVNEV NEELILGIME SFHSILLQNS DVQAMEFAEI LVSADWFSFA
481 FGCLGNFSSD KMKQRVYQML SSLVDVLHRQ KLGSHIRDAL FCLPSDPQDL LFLLGQDSSN
541 NQELASCQFA ALVIFHTGWI HNDRLADDKL VFASLEQYIL VNRTSLISDS PAVLQLVNLY
601 SICRSLQNKR YQISYSLEAE RIVFHLLNEY DWDLGSCDIH LESLKWLFQQ ESISKGLTYQ
661 IQKISRNNLI GKEVHNVYGD GRQRSLTYWF AKMISEGDNY AATLLVNLLT HLAENGDKES
721 DVISILNIMT TVVSKFPTAS NHLSMNGIGN AIHRLVCSFR NSSMGTSFPT LLVLIFNILA
781 SVQPGVLKND ESWNAVFIKL LHYLSLRDTA ITQPDHEGMM VIGILCLVLY HSSHGALLDS
841 SRIIMVNSYL VSAINNVVDV ACSRGPALTQ SQDETEIWEA LAFTLPLCFF SLRSLQIVLA
901 GAVDWQTFCG PSSNLETLPV VCIQCHNLCR LMHFGTPQIK LMASYCLLEL FTGLSQQIDI
961 RKEQLRCSSS YLKSMKAVLC GLVFYDDIRV ATNSALCLSM IMGWEDMEGR TEMLKTSSWY
1021 RFITEEMSVS LAMPCSASIT FVNHHKPAVY VTVAMLRHKN KPAWLRSVFD ESCISSMIQN
1081 LNGTNISSEI VILFRELMQA QLLNSDQVTK LNLVFLASRK QMQRNGTLDE TVEEQMQRTV
1141 SSIHDHGEVC SYLVDMMLSN SFGHTSGSEA TCIQKKKQVL AEMEQFSERL STRRDYVTDS
1201 RPCKVYTRQR KRIHAK
//