LOCUS RID68883.1 1026 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1089
PROTEIN_ID RID68883.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01014"
/db_xref="Phytozome:Brara.C01014"
intron_pos 178:0 (1/19)
intron_pos 222:2 (2/19)
intron_pos 268:0 (3/19)
intron_pos 286:0 (4/19)
intron_pos 333:0 (5/19)
intron_pos 383:2 (6/19)
intron_pos 412:0 (7/19)
intron_pos 502:0 (8/19)
intron_pos 551:0 (9/19)
intron_pos 603:0 (10/19)
intron_pos 625:2 (11/19)
intron_pos 666:2 (12/19)
intron_pos 700:0 (13/19)
intron_pos 737:2 (14/19)
intron_pos 831:2 (15/19)
intron_pos 898:2 (16/19)
intron_pos 930:0 (17/19)
intron_pos 954:0 (18/19)
intron_pos 987:0 (19/19)
BEGIN
1 MGTKVSDHLL STVRSVVGSD YSDMDIIRAL HMANLDPTAA INIIFDTPSF SKPNDIAVPA
61 AANSTPRGFN GGRRVEDGLK VCPFSEGAAN HHRVEEEVDE SVSGDECWWF VGCSELSGLS
121 TCKGRRLKAG DELLFTFPSS KALKSEATMP GKRFGRGRPS ARNVSDIVRF STKDSGEIGR
181 IPNEWAKCLL PLVRDKKVRI EGRCKSAPES LGIMDTILLS VSVYINSSMF QKHSATSLKV
241 ATNTAEESTF HPLPNLLRLL GLTPFKKAEF TPEDLSTRKR PLSSKDPVST SLLQLNKVKK
301 LNQDAEGDEN EHCISDGDLD NIVGVGDSSD LQEMETPHKL LCELRAYQKQ ALHWMTQLEK
361 GHCTDEAATM LHPCWEAYYL ADKRELIIYL NSFTGDATIH FPSTLQMARG GILADAMGLG
421 KTVMTISLML AHSWKAALTG VQCLINEGDK GISSSLDEST SPSVKATKFP GFDKKLLEQQ
481 SALENGGNLI ICPMTLLAQW KSEIEMHAKP GSLSVYLHYG PDRPKDVKLL TQSDVVITTY
541 GVLISEFSAE NAAKSEGLYA VRWFRIVLDE AHTIKNSKTQ VSLAAAALVS DRRWCLTGTP
601 IQNTLEDLYS LLRFLRIEPW GTWAWWNKLV QKPFEEGDER GLKLVQSILK PIMLRRTKSS
661 TDREGRPILV LPPADARVIY CELSESERDF YDALFKRSKV KFDQFVQQGK VLHNYASILE
721 LLLRLRQCCD HPFLVMSRGD TAQYSDLNKL AKRFLGGKSS GLEKEGKDVL PSVAFVQEVV
781 EELSKGEQGE CPICLEAFED AVLTPCAHRL CRECLLASWR NSSSGLCPVC RKTVSKQELI
841 TAPTESRFQV DVEKNWVESS KITALLQELE SFRSSGSKSI IFSQWTAFLD LLQIPLSRNN
901 ISFVRLDGTL NQHQREKVLK EFSEDGSIMV MLMSLKAGGV GINLTAASNA FVMDPWWNPA
961 VEEQAVMRIH RIGQTKEVKI RRFIIKGTVE ERMEAVQARK QRMISGALTD QEVRSARIEE
1021 LKMLFT
//