LOCUS RID68738.1 1103 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-944
PROTEIN_ID RID68738.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00879"
/db_xref="Phytozome:Brara.C00879"
intron_pos 25:0 (1/8)
intron_pos 54:0 (2/8)
intron_pos 84:0 (3/8)
intron_pos 111:0 (4/8)
intron_pos 176:0 (5/8)
intron_pos 883:0 (6/8)
intron_pos 932:0 (7/8)
intron_pos 1059:2 (8/8)
BEGIN
1 MSRNARMTSD LSRAGGPVAR DVEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW
61 FSGNEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS LIYNERSLDV ICKDKDEAEV
121 WFSGLKALIS RCHQRRWRTE SRSDGTPSEA TSPRTYTRRS SPLHSPFSSN ESFLKDGSNH
181 HRLHSPYESP PKNGIDKAFS DMSLYALPPK GFFPSDPAAI SVHSLSSGAS DSVHGHMKGM
241 SMDAFRVSLS SAISSSSHGS GHDDGDALGD VFIWGEGIGE GVLGGGSHRV GSSFEIKMDS
301 LVPKALESSI VLDVQNIACG GQHAVLVTKQ GETFSWGEES EGRLGHGVDS NVQHPKLIDA
361 LGTTNIELVA CGEYHSCAVS LSGDLYTWGK GDFGILGHGN EVSHWIPKRV NFLMEGIHVS
421 SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDKKSVFIP REVDSLKGLR TVRAACGVWH
481 TAAVVEVMVG SSSSSNCSSG KLFTWGDGDK GRLGHGDKEP KLVPTCVAAL VEPNFCQVAC
541 GHSLTVALTT SGNVYTMGSP VYGQLGNPHA DGKVPARVEG KLHKSFVEEI ACGAYHVAVL
601 TAKTEVYTWG KGSNGRLGHG DVDDRNSPTL VESLRDKQVK SIACGSNFTA AVCLHKWASG
661 MDQSMCSGCR QPFNLRRKRH NCYNCGLVFC HSCSSKKSLK ACMAPNQNKP FRVCDKCFNK
721 LKKAMEADGS SHSSLSRRES VNQGSDAIDR DDKLDSRSDG QLTRFSLLEP VRQVDNRSKK
781 NKKYEFNSSR VSPVPGSQRG SLNITKSFNP TFGVSKKFFS ASVPGSRIAS RATSPISRRP
841 SPPRSTTPTP TLSGLITPRI VVDDTKRTND NVSQEVLMLR SQVENLTRKA QLQEVELERT
901 TKQLKEALAI ASEETARCKA AKDVIKSLTA QLKDMAERLP VGSVRTIKSP SHNSFGSSPD
961 YVAPSSNSLN RPNSRGSDPD GPNTIPMFAN GASTPVFDGA SFRQQANHAA ESINRNSTRA
1021 KESEARNENE WVEQDEPGVY ITLTALPGGA RDLKRVRFSR KRFSEKQAEE WWAENRGRVY
1081 EQYNVRLVVD KSSVGVGSED LAH
//