LOCUS RID68344.1 1229 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-550
PROTEIN_ID RID68344.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00509"
/db_xref="Phytozome:Brara.C00509"
intron_pos 200:2 (1/3)
intron_pos 570:0 (2/3)
intron_pos 667:0 (3/3)
BEGIN
1 MDSSLFFTST VASAIVLLTL LRKVRFHQED NREEDSPSSL SPSTVPQPSS SDIWTHDVFP
61 SFRGADVRRT FLSHIQMEFE RKGITPFVDN EIRRGESIGP ELIKAIRGSK IAIILLSRNY
121 ASSKWCLDEL VEIMKCREEL GQTVLAIFYE VDPSDVKKLA GDFGRVFRKT CAGKTNECIE
181 RWRKAFAKVA TIAGYHSGSW DNEAAMIKKI ATDISNRLNN FTPSNDFDGL VAMGAHLKKM
241 EPLLCLGSDE VRMIGIWGPP GIGKTTIARA AYSKLSNNFQ LSVFMDDLKA NYTRLCSDDY
301 SLKLQLQQQF MSQITNQKDM VVSHLGVASN RLKDKKVLVV LDGVDRSLQL DAIAKEPCWF
361 GPGSRIIITT QDQRLFKAHG VNLIYKVDFP TDDESLQIFC TYSFGQKFPK DGFEELALEV
421 TKLAGELPLG LRVMGSYFRG MSKDEWITAL PRLRTSLDAD IRSILKFSYD ALDDEDKDLF
481 LHIACFFNSE WINKAEEYLG KKFLEVRQRL KVLAKKSLIS IDWGVIRMHS LLEKLGREIV
541 CKQSIHEPGQ RQFLCDKREI SEVLTGDATG STSVIGIKLE YGREDEEIDI SEKAFEGMSN
601 LQFLKVYGYR DSLQLTGGLS YISHKLRLLH WKYFPVTCFP WTVNLEFLVE VIMPHSKLEK
661 LWGGIKSLRS LKRMDLSDSV NLKELPELST ATNLEKLNLR NCSSLIKLPS LNGNSLEELD
721 IGGCTSLVEF PSFIGNTVNL RILDLRYCSS LISLPSLSGN SLEKLEISGC SSLVEFPSCN
781 GNAVNLRELD LSSFPNILEL PSYVGNATNL EKLDLSNCLN LVELPVSLGN LQKLQRLILK
841 GCSKLEALPT NVILESLKKL DLAGCSSLDL AGCSIIGNAV NLRELDISSL PQLLELPSII
901 GKATNLEKLD LRFCSNLVEL PLSLGNLQKL QRLILKGCSK LEVLPANINL ESLNVLNLCD
961 CSMLTRFPQI STNIIFLDLI GTAIEQVPPS ITSWPRLEEL KMSCFENLKE SPHALERITE
1021 LCLTDTEIQE VPPWVKKMFS LNRFVLMGCR KLVSVPPISD SISSVDASDC ESLEILECSF
1081 PNPKVRLNFA NCFKLNQEAR DLIIQNSCRY AVLPGGEVPE YFTHRATGGG PLTIKLTENP
1141 LPKSMRFIAC ILLVDKGDHD ACSEEKSTEV FCQYNDSMHM LHPALAEHLY IFRVKAEVTS
1201 SELRSDFKLK IDDVWKIAEC GLVQDLEIP
//