LOCUS RID68028.1 1121 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-234
PROTEIN_ID RID68028.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00215"
/db_xref="Phytozome:Brara.C00215"
intron_pos 74:2 (1/27)
intron_pos 96:0 (2/27)
intron_pos 124:1 (3/27)
intron_pos 217:0 (4/27)
intron_pos 252:1 (5/27)
intron_pos 306:0 (6/27)
intron_pos 327:2 (7/27)
intron_pos 336:0 (8/27)
intron_pos 363:0 (9/27)
intron_pos 387:0 (10/27)
intron_pos 411:0 (11/27)
intron_pos 442:1 (12/27)
intron_pos 467:0 (13/27)
intron_pos 484:0 (14/27)
intron_pos 510:0 (15/27)
intron_pos 550:2 (16/27)
intron_pos 604:1 (17/27)
intron_pos 630:0 (18/27)
intron_pos 668:0 (19/27)
intron_pos 702:0 (20/27)
intron_pos 749:0 (21/27)
intron_pos 807:0 (22/27)
intron_pos 828:1 (23/27)
intron_pos 875:0 (24/27)
intron_pos 927:2 (25/27)
intron_pos 954:0 (26/27)
intron_pos 987:0 (27/27)
BEGIN
1 MSPGVRSLTV LGKFKPFGLI AEATDCKPPD VDVSDSYEYF LFDPHLTGQG NDGDGNEANF
61 SRQREHELFI RHNRIIWTSG SRVLKRFTLS SPIIKACWSH LGRGPEAFLC VLQIGCLTVY
121 STSGEVVSVP LSRTVISIWP LPFGLLLQQA AEVNQSSHIP FSSATPTLAS REMLRQRKET
181 GNISPQNFHS SVAHELTSRR DMSSHLILRD PLEEPEPIYL EERGKLNIMK DYDERTIWTS
241 DRLPLMTSYN KGKMQHSVWA AEFIDSNREA SASCSSGVAP DTVFPKRVSF RRIWQAKGAK
301 KAASKVFLAT DDAVPVICFL ILEQKKLDIY QYFTQDHEST TVGLMLGLAA SYRRTMQPEI
361 AKALFFHVPA RYQASYAEFE IPTLLQSAAL VSVGILFEGS AHQQTMQLLL GEIGRRSAGD
421 NILEREGYAV SAGFSLGLVA LGRGGDALGS LDPFVNRLLQ YLGAKEGRSL LAPSNEDHRS
481 AAQITDGSTS NVDITAPGAI IALALMYLKT ESEVIFSKLY IPQTHYELEC VRPDFIMLRV
541 IARNLIMWSR IRPTCEWIES QVPEVVKNGI SHLQDDMDDM YEMDVEALVQ AYVNIVAGAC
601 ISLGLRFAGT RDGNARDLLY NYALYLLNEI KPVSATSGTA FPRGISKFVD KGTLEMCLYL
661 VILSLSVVMA GSGDLQIFRL LRFLRSRNSA DGHANYGTQM AVSLATGFLF LGGGMRTFST
721 SNGSIAMLLI TLYPRLPSGP NDNRCHLQAF RHLYVLATEA RWLQTIDVDS GLPVYAPLEV
781 TVKETELYSE TRFCEVTPCI LPERAILKRI CVCGPRYWPQ QVELVPEEKH WWSFGDKSDP
841 FSSGVIHVKR KVGACSYVDD PVGCQSLLSR AMHKVFGLRT LGESNTLANS HRELDSDSVD
901 HLVSTFSSDP SLIAFAQLCC DKTWNDRSDS DFKEFCLQVL FDCISKDRPA LLQVYLSLYT
961 TIASMADLLV KTDSNVCDSL SISSLKVALA YNEAVTSGRL ASSGGFVQSI FLASLGKRCE
1021 EILNCSTELK INLRNYLTSE AWSDDHNSKL QKDTILLSWY LKWFSVPSPS IIRAAVEKIK
1081 SKFNISTSAV PLLRLLLPST HISAISEIDR VFFPSNVTIA L
//