LOCUS RID64311.1 820 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010632-3508
PROTEIN_ID RID64311.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A5"
protein /locus_tag="BRARA_E03255"
/db_xref="Phytozome:Brara.E03255"
intron_pos 46:0 (1/15)
intron_pos 91:0 (2/15)
intron_pos 138:0 (3/15)
intron_pos 182:0 (4/15)
intron_pos 244:0 (5/15)
intron_pos 270:0 (6/15)
intron_pos 310:0 (7/15)
intron_pos 343:0 (8/15)
intron_pos 464:0 (9/15)
intron_pos 525:0 (10/15)
intron_pos 572:2 (11/15)
intron_pos 601:0 (12/15)
intron_pos 671:0 (13/15)
intron_pos 722:0 (14/15)
intron_pos 757:0 (15/15)
BEGIN
1 MGSNTGDLVT RVQPAHLFDH DALFRYAADN VSGFPTNPSQ FTISQFGHGQ SNPTFLIAVG
61 SGSSSKRYVL RKKPPGKLLQ SAHAVEREFQ VLKALGEHTQ VPVPKVFCLC TDPSVIGTAF
121 YIMEFMEGRI FIDPKLPNVA PERRTAIYRA AAKALASLHS ADVDTIGLDK YGRRANYCQR
181 QIDRWFKQYL ASTNEGKPVR NPKMFELVDW LRKSIPAEDS TGATSGLVHG DFRIDNLVFH
241 PYEDRVIGIL DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGLETTG LPDGILSMPE
301 FLLEYCSALG KPWPAANWKF YVAFSLFRAA SIYTGVYNRW LMGNASAGER ARNTGVQANE
361 LVECALGYIA RENVLPAHPP SGKRDVSRPS YESLVDGTGR FVPNRKVLEL RGKLVKFMET
421 HIYPMEKEFA KLAQSDLRWT VHPEEERLKE EAKRQGLWNL FIPVDSAARA RRELTAIENK
481 QSFDQLFGEG LTNLEYGYLC EIMGRSVWAP QVFNCGAPDT GNMEVILRYG NKEQIAEWLI
541 PLLEGKIRSG FAMTEPQVAS SDATNIECSI RRQGDSYVIN GTKWWTSGAM DPRCRVLILM
601 GKTDFNAPKH KQQSMILVDM RTPGIHVKRP LTVFGFDDAP HGHAEISFEN VIVPAKNILL
661 GEGRGFEIAQ GRLGPGRLHH CMRLIGAAER GMELMAQRAL SRKTFGVFIA QHGSFVSDLA
721 KLRVELEGTR LLVLEAADHL DQFGNKKARG ILAMAKVAAP NMALKVLDTA IQVHGAAGVC
781 SDTVLAHLWA TARTLRIADG PDEVHLGTIG KLELQRASKL
//