LOCUS RID64235.1 815 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010632-3432
PROTEIN_ID RID64235.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A5"
protein /locus_tag="BRARA_E03185"
/db_xref="Phytozome:Brara.E03185"
intron_pos 56:1 (1/9)
intron_pos 71:0 (2/9)
intron_pos 106:1 (3/9)
intron_pos 145:2 (4/9)
intron_pos 272:1 (5/9)
intron_pos 396:2 (6/9)
intron_pos 495:0 (7/9)
intron_pos 549:0 (8/9)
intron_pos 720:0 (9/9)
BEGIN
1 MVGSGARVSI GADTRKTIQT IKEITAGNYS EDEIHAMLLD CSMNPDEAAQ RLLLQDPFLE
61 VKKKRDKRKE NLSNKDSVEP QWRSGGPGRG SRGGRMNFSS RHSSHDGAGA KNSFRKENSP
121 KQVADPSTST SQQQIKTKDN ALVCSLPPVM DKSSVGLTSG SPDGAPSAVE SSKNRVALGS
181 NAVHTEQKSA NSLPLSRPSS SEVRFTSSNS KPVSEQHLGQ SKLQNRSRGV GKATVNDAYV
241 PRPASSHSNS TGSRPSSNYS NRSHHTVGPQ RVKEWKPKPV NHTTTQGSGA SATTEALAVP
301 TEASEKSVED VVPSAEGTSK LQRQLEDLQI QRQHVIIPNH ILVPEAERTK FSFGSFDAGF
361 SITSSSVAFP ENEKRSAPLS QNSQEVENSL EEDELSHPNV HSTEKDEENN VYSESPSQVP
421 NDIAGEGITA ANAASVYDVS KQENMLESES NQSPFDHVPS NITGPVPPAP GSQLPQFENA
481 DPQARDALRI PNFVVQQPFD TASYYAQFYR SGPDSDGRVS PFVSPGVASK FNGNVTVLPP
541 HSSQTMQESG NNSVLSTASP TPLVTQPAGL MQSSIPVTQQ PVPFLRPPGL HMSHYPPNYM
601 PYGHYFSPFY LPHPAMQQFL SNGAFAQQPQ ASSVYPPPPP PGAATGGKYT FPHHKPGSNN
661 TGNLTHVGTP GVYGSPSHGS FPAGYNPNSA ASAVNSTSNE DLNTLQLKEN NGYSTTGQQS
721 EALPVWIAGP GRDVPSSFYG LQHHGQHVTY APAQAGHVTF PGMYHPGQAV TAAGGVHHPL
781 LQQSQGVAGA EMVAPGPPNV FPQPQQTPMN WPSNY
//