LOCUS RID64115.1 988 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010632-3312
PROTEIN_ID RID64115.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A5"
protein /locus_tag="BRARA_E03073"
/db_xref="Phytozome:Brara.E03073"
intron_pos 326:0 (1/15)
intron_pos 431:0 (2/15)
intron_pos 466:0 (3/15)
intron_pos 489:0 (4/15)
intron_pos 545:0 (5/15)
intron_pos 569:0 (6/15)
intron_pos 608:0 (7/15)
intron_pos 675:0 (8/15)
intron_pos 728:0 (9/15)
intron_pos 758:0 (10/15)
intron_pos 789:0 (11/15)
intron_pos 840:1 (12/15)
intron_pos 890:0 (13/15)
intron_pos 922:0 (14/15)
intron_pos 953:0 (15/15)
BEGIN
1 MSTIMESPET LGKRKASSDE TPTPEPTTKR RSSQKRACVH EVAVPNGYTP SKDEAIHGTL
61 DNPLYNGDMA KTYPFQLDPF QSISVACLER KESILVSAHT SAGKTAVAEY AIAMAFRDKQ
121 RVIYTSPLKA LSNQKYRELQ HEFHDVGLMT GDVTISPNAS CLVMTTEILR AMLYRGSEVL
181 KEVAWVIFDE IHYMKDRERG VVWEESIIFL PPAIKMVFLS ATMSNATEFA EWICYLHKQP
241 CHVVYTDFRP TPLQHYAFPM GGSGLYLVVD ENEQFREANF IKMHDTFPKP KSEGKKSANG
301 KSGGRGGAKG GGGGGGDSDV YKIVKMIMER KFQPVIIFSF SRRECENHAL SMSKLDFNTE
361 EEKSTVEEVF NNAMLCLNEE DRSLSAIEMM LPLLQRGIAV HHSGLLPVLK ELVELLFQEG
421 LVKALFATET FAMGLNMPAK TVVFTAVKKW DGDSHRFIGS GEYIQMSGRA GRRGKDERGI
481 CIIMIDEQME MDVLKDMMLG KPAPLLSTFR LSYYTILNLL SRAEGQFTAE HVIKHSFHQF
541 QYEKALPDIE NKVTKLEEEA AILDASGKAE VAEYHKLKLD IAPLEKKLMS EIIRPERVLC
601 FLDTGRLVKI REGGTDWGWG VVVNVVKKTS VGTSSQGGGY IVDTLLHCST GVSENGAKPK
661 PCPPRPGEKG EMHVVPVQLP LITALSRLRI SVPSDLRPLE ARQSILLAVQ ELSSRFPLGF
721 PKLHPVKDMN IQDTEIVELV SQIEEAEQKL LAHPMHKSED DQQMKSFQRK AEVNYEIQQF
781 KSKMRDSQLQ KFRDELRNRS RVLKKLGHID ADGVVQLKGR AACLIDTGDE LLVTELMFNG
841 TFNDLDHHQV AALASCFIPV DKSNEKVELK NELNRPLQQL KDSARRIAEI QHECKLEIDV
901 EEYVESTIRE GLMDVIYCWS TGSTFAEVMN KTDIFEGSII RSARRLDEFL NQLRLAAEAV
961 GENNLASKFA AASESLRRGI MFANSLYL
//