LOCUS RID63443.1 1091 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010632-2640
PROTEIN_ID RID63443.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A5"
protein /locus_tag="BRARA_E02452"
/db_xref="Phytozome:Brara.E02452"
intron_pos 55:1 (1/20)
intron_pos 113:0 (2/20)
intron_pos 169:0 (3/20)
intron_pos 206:0 (4/20)
intron_pos 232:0 (5/20)
intron_pos 297:2 (6/20)
intron_pos 318:0 (7/20)
intron_pos 343:0 (8/20)
intron_pos 369:0 (9/20)
intron_pos 390:0 (10/20)
intron_pos 418:0 (11/20)
intron_pos 477:2 (12/20)
intron_pos 491:0 (13/20)
intron_pos 539:0 (14/20)
intron_pos 579:0 (15/20)
intron_pos 651:0 (16/20)
intron_pos 705:0 (17/20)
intron_pos 930:1 (18/20)
intron_pos 999:0 (19/20)
intron_pos 1045:1 (20/20)
BEGIN
1 MLVADDDDSV QIVRLLDQTL SSIDGFSVHE ATEALDRLST ELPHFPYRLL SIASGGENPS
61 QRVAAATYLK NFTRRNTGSE GIISEVSKEF KDQLLRALLH AEPALLKVLL ELFHIVVVSE
121 FVKKDAWPEL VLELRSAIEK SSLISCSESS WSTVNALMVL LTVVKPFQYF LQPKLVKEPV
181 PQQLESISNE VLVPLVAVFH RLVDKALTTH EWGELEMEKT LHIISKCLYF SVKSHMPSTL
241 SHLLGSFCGD MIRILDSLSF DWSVTPSDGY LLRLKTGKRS LLLFGTLVSR HRKYSDKLVP
301 EIVKCSMKIV KHSSNISKLG SLAERIISLA FDVISRVMEI GPGWRLLSPH FSLLLDSAIF
361 PALALNERDI SEWEEDADEF IRKNLPSELE EISGWREDLF TARKSAMNLL GVIAMSKGPP
421 VSTTNKTSSA ASKRKKGEKN RINNQRRSMG DLLVLPFLSK FSVPSKSNIL DASTSAAYFG
481 VLMAYGGLQE FIQEQNPEYV TSLVRTRVLP IYSTSDCSPY LVASANWVLG ELASCLPEDM
541 NVDVFSSLLK ALAMPDQEEI SCYPARVSAA GGICSLLENE YTPPEWLPLL QIIIGRIGKE
601 DEEDSILFQL LKSVVESGSQ DIAMHIPYIV SSLVSNMLNF IDPSEDQWSQ ATVGGLETLA
661 AMSQTYEISK PETDEEENEA TEIWLTGQGT ISKALSALLQ HAWLATDVPP TSCIDHFSKM
721 LWFIALASTN CNVAVELRLA DLLVVWADLL ASWDGWEESE DLSVFDCIEE VVSISTKYGF
781 RSFLYRDMPS PPAMPVRPRS VVESIGSFVS KAILEYPSAT RRACSCVHTL LHVPDYSSDI
841 EGVRKSLAVV FSEAAFSHFL QLREKPCSLW RPLLLAISSC YISHPDVVEC VLEKVVSGGF
901 ELWVSSLAFS YSLTLDASPP SIASEVKLYV LTLVKVIELL LDVRQGNATD DLVRKCFVSL
961 MEASRRLEEI AEETDDDEDD GEPEEEEEES DDNDSNDEDS ESDDECEETE EEFLERYAKA
1021 AAELEDSEVI EEADEEDNER EIDLGHLDEI DTQKLVLSLM ERHHQKVVKL VPSEVISTFL
1081 NAFPAYTGFF T
//