LOCUS RID63435.1 2081 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010632-2631
PROTEIN_ID RID63435.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A5"
protein /locus_tag="BRARA_E02444"
/db_xref="Phytozome:Brara.E02444"
intron_pos 159:0 (1/33)
intron_pos 211:0 (2/33)
intron_pos 239:0 (3/33)
intron_pos 279:0 (4/33)
intron_pos 317:0 (5/33)
intron_pos 348:0 (6/33)
intron_pos 401:2 (7/33)
intron_pos 426:2 (8/33)
intron_pos 456:0 (9/33)
intron_pos 475:2 (10/33)
intron_pos 497:0 (11/33)
intron_pos 519:0 (12/33)
intron_pos 554:0 (13/33)
intron_pos 589:0 (14/33)
intron_pos 667:2 (15/33)
intron_pos 691:0 (16/33)
intron_pos 709:0 (17/33)
intron_pos 728:2 (18/33)
intron_pos 751:0 (19/33)
intron_pos 770:0 (20/33)
intron_pos 1229:1 (21/33)
intron_pos 1255:0 (22/33)
intron_pos 1663:0 (23/33)
intron_pos 1699:0 (24/33)
intron_pos 1749:2 (25/33)
intron_pos 1774:0 (26/33)
intron_pos 1799:0 (27/33)
intron_pos 1880:0 (28/33)
intron_pos 1913:0 (29/33)
intron_pos 1938:0 (30/33)
intron_pos 1957:2 (31/33)
intron_pos 1995:0 (32/33)
intron_pos 2027:0 (33/33)
BEGIN
1 MPRNAPRIEM PESEENEFAS FSLFSPSRAP LNSIPDPSQL QKTTRLSGFD LAQKLELART
61 QGPERRFEGR AGAHDSNPRI VTRNARSRSE PNSAQSTPTR SGARVSLGGG CVTGARVAQS
121 FVGRGRIPRG ISMADCAETT PHFEMNEDHS FWKEHNVQVL IRLRPLSTME RTTQGHGRCL
181 KQESPQTLVW LGHPETRFTF DHVASETISQ EKLFRVAGLP MVENCLSGYN SCVFAYGQTG
241 SGKTYTMMGE ISEAEGSLGQ DCGVTARIFE YLFSRIKMEE EGRREEKLRF SCKCSFLEIY
301 NEQITDLLEP SSTNLQIRED LGKGVYVENL VELNVRTVND VLKLLLQGAA NRKIAATHMN
361 SESSRSHSVF TCTIESIWEG DSLTHSRFAR LNLVDLAGSE RQKSSGAEGD RLKEAANINK
421 SLSTLGLVIM SLVDLAHGKH RHVPYRDSRL TFLLQDSLGG NSKTMIIANV SPSLCSTNET
481 LSTLKFAQRA KLIQNNAKVN EDASGDVTAL QQEIRKLKVQ LSSLMKNHNS CGALSDCICE
541 VARKTQQDKC HCQVKNTKDI LIGALRREDI AETALQKSEA EIERIDSLVR DMEEDAKCIK
601 RMLNLQQEKV GETEFSTSDS LMTNECLIEE NKSLKGEVNL LREIMDKNPE LKRSTLENTK
661 LREQLLRYQK FYDHGEREAL LSEMTGLRDQ LLDVLEAKDE SFSNHVIKEN EVEKELEDCR
721 KMNSSFVREL DEIQARVGRY MKFDQTQSDF VASTISGAEQ VNQAHKHSTV ETMSAIGENK
781 EEVAFSESKN SSNIYGESDN PDGIRVWVIN ESQDVLEEND RSIKLLNNKS SMERDAVPRI
841 EGQDLELSGM VNNTDAVMKA DEGTDRSVLQ FKLSKVIKDL EEAKNFNSQY EKEQKLLLSQ
901 QQDIEVVREQ VETETARTIL ELQEEVIALQ SEFEGRICKL TEENQSMKDA ITAREAEIRA
961 LHQDWEKATL ELTNFIVDGS KSITDASTQI ESIVCSFPHV NSWIGDYVEK AAKDCIRKEE
1021 TILLLHKSLE DARILLAEMD LKLNCLKGAT IALNEFQLDG NAATTEESFR VSTGLDRISN
1081 EIDTLENDLN AKQCSILEAE RHAEAAISVK KWLSDSRNQH QVPEKVENQS VKESGPSSSV
1141 SASPSAEGNA DINFSMDGYI SEATYTKGDE LSTSSSDFSN CRLQHDCALK AEGQGGSASE
1201 SDAQEIHNRT TSAALLVKSG SEDCVYCGEG RQTLQRPLTI TMGRSETERK CSNPRVDPVR
1261 SFFDRFEAVS ATMKEVDLTL CELVKANEKS KFVTGMCLQT HEEQMVKEKS LLDDFEQVKS
1321 TLLAKEQESQ ILLNQTQSTL ADMEKSVSLL EECLLETKRE VGETVEALVS DVEQIVSENM
1381 EREFTMYATY QCHIGKLMDQ ILDHRKQVIT PHVAGQENQQ SMETKAIGYS AEDGVTGKLN
1441 RVHKADVVTG FEGEEVVQTH EGLLNENFYL KKELERKEAL FEGLLFDFRL LQESASNKRD
1501 IKDEMDELFD ALCKVQKDLE VKANQVQALF VHNENLENCC IDLKNALLTS KADLEQANDS
1561 IQVLEEQNDE LNVLVRDLCM EKVAAEEGLE EQKELVQRLE NEILHLTTTA EKQLVKSIEE
1621 NLRKTSNEKD QLVEEICSLN DKLKLAYAIA DEKEAFAVEA RQESEASKIY AEQKQEEVKI
1681 LEISVEELER TVNILERRVY DMDEEVKRHR TLETELQALR QRLFRFEDLT GTVVTTTEGR
1741 DEYESQLSTS KELQGAHGQI QVLQKEVAEQ TKEIKQLKEY ISEILLHSEA QASNYQEKYK
1801 TLEVMIRDFK LEDSNSSAAE TAISHKTDKS STRSRGSSSP FRCIVGLVQQ MKLEKDQELT
1861 MARVRVEELE SLLAAKQKEV CTLNTRIAAA DSMTHDVIRD LLGVKMDITS YAELIDQHQI
1921 QRVVEEAKQH AEEIMSKDQE IINLKRHIDA LVKERESCMS ELNKKDTDVL ATQISLDQLQ
1981 ERAQLLSMQN EMLKNDKSNL LRKLAELERT VREAGASNQR VPQTKRDTVS FKLADTDYTK
2041 RLENAQKLLS HANNELAKYR KTSNNIPSTR TQGQSSGTRY R
//