LOCUS RID63187.1 1141 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010632-2384
PROTEIN_ID RID63187.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A5"
protein /locus_tag="BRARA_E02210"
/db_xref="Phytozome:Brara.E02210"
intron_pos 92:0 (1/22)
intron_pos 126:0 (2/22)
intron_pos 174:0 (3/22)
intron_pos 224:1 (4/22)
intron_pos 233:2 (5/22)
intron_pos 289:0 (6/22)
intron_pos 310:1 (7/22)
intron_pos 315:0 (8/22)
intron_pos 343:1 (9/22)
intron_pos 378:0 (10/22)
intron_pos 424:1 (11/22)
intron_pos 464:0 (12/22)
intron_pos 515:0 (13/22)
intron_pos 540:0 (14/22)
intron_pos 566:0 (15/22)
intron_pos 619:0 (16/22)
intron_pos 688:0 (17/22)
intron_pos 756:2 (18/22)
intron_pos 802:0 (19/22)
intron_pos 845:1 (20/22)
intron_pos 894:1 (21/22)
intron_pos 917:0 (22/22)
BEGIN
1 MSQKVTPSMV SLKSLPADYR FDGENSSRAS VGLRNGVSQA GDSEDSPYSG HGVSLEEQSL
61 TDDVDPGAAT MPLPQSDERR WSDTSAYARK KVLQSWVQLP NGNWELGKIL STSGEESVIS
121 LPEGKVIKVI SETLVPANPD ILDGVDDLMQ LSYLNEPSVL YNLNYRYNQD MIYTKAGPVL
181 VAVNPFKEVP LYGNRYIEAY RKKSNESPHV YAIADTAIRE MIRDEVNQSI IISGESGAGK
241 TETAKIAMQY LAALGGGSGI EYEILKTNPI LEAFGNAKTL RNDNSSRFGK LIEIHFSESG
301 KISGAQVQTF LLEKSRVVQC AEGERSYHIF YQLCAGASPG LREKLNLTSA HEFKYLGQSN
361 CYSINGVDDA ERFHSVKEAL DIVHVSKEDQ ESVFAMLAAV LWLGNVSFTV IDNENHVEPV
421 ADESLSTVAK LIGCNINELK LSLSKRNMRV GKDTIVQKLT LPQAIDARDA LAKSVYSCLF
481 DWLVEQINKS LAVGKRRTGR SISILDIYGF ESFDQFCINY ANERLQQHFN RHLFKLEQEE
541 YIQDGIDWTR VDFEDNQDCL SLFEKKPLGL LSLLDEESTF PNGTDLTLAN KLKQHLHSNS
601 CFRGDREKLF TVVHYAGEVT YDTTGFLEKN RDLLHLDSIQ LLSSCSCHLP QAFASSMLIQ
661 SEKPVVGPLY KAGGADSQRL SVATKFKGQL FQLMQRLGNT TPHFIRCIKP NNVQSPGLYE
721 QGLVLQQLRC CGVLEVVRIS RSGFPTRVSH QKFARRYGFL LVENIADKDP LSVSVAILHQ
781 FNILPEMYQV GYTKLFFRTG QIGVLEDTRN RTLHGILRVQ SSFRGYQARC HLKELKMGIS
841 ILQSFVRGDK VRKEFAELRR RHRAAATIQS QVKSKFARKQ YKGITDASVL IQSAIRGWLV
901 RRCSGDLRWL KSVGTKTNES GEVLVKASVL SDLQRRVLKS EAALREKEEE NDILQQRLQQ
961 YENRWSEYET KMKSMEEIWQ KQMRSLQSSL SIAKKSLAVE DSARNSDASV NASDATDWDS
1021 SSNQFKSQAS NGGGGRQQQQ PMSAGLSVIG RLAEEFEQRA QVFGDDAKFL VEVKSGQVEA
1081 NLNPDRELRR LKQMFETWKK DYGGRLRETK MILSKLGSEE SSGSMEKVKR KWWGRRNSTR
1141 Y
//