LOCUS RID62647.1 1017 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010632-1844
PROTEIN_ID RID62647.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A5"
protein /locus_tag="BRARA_E01706"
/db_xref="Phytozome:Brara.E01706"
intron_pos 311:0 (1/13)
intron_pos 425:0 (2/13)
intron_pos 479:0 (3/13)
intron_pos 535:0 (4/13)
intron_pos 588:0 (5/13)
intron_pos 630:2 (6/13)
intron_pos 732:0 (7/13)
intron_pos 762:0 (8/13)
intron_pos 787:2 (9/13)
intron_pos 848:0 (10/13)
intron_pos 893:2 (11/13)
intron_pos 920:1 (12/13)
intron_pos 932:2 (13/13)
BEGIN
1 MEALTELCDI IAENPKQFSE KLAWICGRCP QTEWLLAESP RVSRSHLNAV LAVARIISKN
61 PESTDTRAKS VVTDFLSSAV PASFRRSFWP HSFPSHSISA FYSDFLTYLS CAAHLSPEFA
121 TEVARFTGEV VIAATSCRES DGGDPSISKA FLVALSQNFP SILQSDGDKL ITMLLDQFVV
181 SPSPKEHQRQ QNSDETSSAH SSAQTEESSP GSTVSSMSSS VVVNGGSIVW KSGVDQLSFG
241 FSEGSGGSNP VFTQQVASFE DESIESLEMQ EISFRLITHI LDKVKIDSKL LDQVSFIAKK
301 QLQSMSAFLK SRKRDWNEQG PVLKTRVNAK LSVYHAAAKM KIKSLVSLET DGKTSKRLVL
361 ETLALLLDAA DACLTSVWRK MKACEELFGS LLSGIAKIAV ARGGQPLRVL LIRLKPLVLA
421 VCSQPDTWAS NQGAMIESIF KTSCEIIESG WDKDRAPVDT FIMGLASSIR ERNDYEEQVD
481 KEKHVPAVQL NVIRLLADLN VAVKKPDVAD MILPLFIESL EEGDASTPSF LRLQLLDAVS
541 RIATLGFEKS YRETVVLMTR SYLSKLSSVG AVESKTSAPE ATTERVETLP AGFLTIASGL
601 TDTKLRSDYR HRLLSLCSDV GLAAESKSGG SGVDFLGPLL PAVAEICSDF DPTLDVEPSL
661 LKLFRNLWFY IALFGLAPPI LKAPTPAVKS TSNSANSSGS MSGLQAVGGP YMWNTQWALA
721 VQRISQGTPP LVVSSVKWLE DELELNALHN PGSRRGNGNE KFCSCQTQGN MQKFRSGLQL
781 LEDRIYRTSL GWFAHQPEWY DVNIPNFCQS EALSVSVFVH FLSSELSDSS QSDSKGKPRE
841 SGNLIDVTDH YHPVWGEMDN YTVGKEKRKQ LLLMLCQHEA DRLDVWAQPI SSKDSPYSRL
901 KISSEKWTEH AKTAFSVDPR VMKSKTWHQF VSLCVKGYLA ARRYMDGIIS TVQMMLESGL
961 PCFSRGDPIG NLRKRFHPEM SEREAAHFMI HVCTDAYNKW TTAGYDLIQY LQQGIEK
//