LOCUS RID62095.1 1145 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010632-1292
PROTEIN_ID RID62095.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A5"
protein /locus_tag="BRARA_E01189"
/db_xref="Phytozome:Brara.E01189"
intron_pos 296:1 (1/10)
intron_pos 380:2 (2/10)
intron_pos 649:0 (3/10)
intron_pos 690:2 (4/10)
intron_pos 719:0 (5/10)
intron_pos 774:1 (6/10)
intron_pos 788:0 (7/10)
intron_pos 877:1 (8/10)
intron_pos 918:2 (9/10)
intron_pos 1031:0 (10/10)
BEGIN
1 MDSVIIEPDE REALSSLVPS HPPPRKTHSY VEQYEQKPLH HPIRKYSLDE GSRSVPTDSE
61 PVYFDSSDGE FSTEGVATVD GRTGGERGNV EDDHCLITPP SKPAPAPEPQ RGEIAGHGGE
121 VGGGEGGEDI EPLPEFMGAG GGVDVFKVPV RAAVNPGRPP CLEIRPHPLR ETQTGKFLRN
181 IACTESQLWA GQENGVRFWN LEEAYEVGYG VGGQVRRGDE DTAPFHESVA ISPTLCMMID
241 HGNRLVWSGH KDGKIRAWKM DQAVTNTADD SKPFKERLSW QAHRGPVNYI VISSYGDMWS
301 CSDGGVIKIW TFDSLEKSLV LKAEEKHMAA LLVERSGIDL RSQVTVNGTC SISSSDVKFL
361 LVDTVRAKVW AVQHLSFSMW DAQNKDLLKV FNIDGQVENR VDGTPAQGQQ VEETKAKFFS
421 TPKKDKSQGF LQRSRHAIMG AAGAVRRAAT RSTGAFAEDP RKVEAIAIAA DGSIWTGSMN
481 GVIAQWDGNG NRLREVNHHQ QAVLCFCTFG DRIYVGYSSG YIQILDLGGK LVASWVSHNE
541 PVIKLAAGGG FIFSLATHGG VRGWYVTSPG PLDSVIRTEL SQKGNTYARQ DSVKILIGTW
601 NVGEGRASRG ALMSWLGSDV SDVGIVAVGL QEVDMGAGFL AMSTAKETVG VEGSVVGKWW
661 IDAIGNALDE RNTFERMGSR QLAGLLISLW VRKDIRTHVG DLDVAAVPCG FGRAIGNKGG
721 VGLRIRVYDR IMCFVNCHLA AHLEAVTRRN ADFNHIYRSM VFSKGQSLYT VPAAGASSST
781 QAQKNNTNTN IITEEEKSDL AAADFVAFFG DFNYRLFGIT YDEARDFISH RSFDWLREKD
841 QLRAEMSEGK VFQGMREALI TFPPTYKFEK NKPGLGGYDS GEKKRIPAWC DRVIYRDNQS
901 TPFCECNLQC PVVSCTVMYE ACMDVTESDH KPVRCKLHAN IAHTDKSVRR QELGKIIKSS
961 EKLRTMFEEL RYVPETSVST NSILLQSQDT FIFSITNKSN SSRALFNIVC KGQTVVRDDG
1021 GTFGLPRWLE VSPGAGMIKP DASVQVKVHH EDSNTSDESF DGIQQQNSSC EEACDKEVTL
1081 MVIIQGSCST RTTSHSIKVR YCFSAAKSVN LAYSKPKPNN ATKNNQEGST RYQPESYRGG
1141 STRRG
//