LOCUS RID60891.1 887 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010632-88
PROTEIN_ID RID60891.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A5"
protein /locus_tag="BRARA_E00080"
/db_xref="Phytozome:Brara.E00080"
intron_pos 179:2 (1/9)
intron_pos 241:1 (2/9)
intron_pos 379:0 (3/9)
intron_pos 404:0 (4/9)
intron_pos 440:0 (5/9)
intron_pos 479:1 (6/9)
intron_pos 526:2 (7/9)
intron_pos 567:0 (8/9)
intron_pos 744:0 (9/9)
BEGIN
1 MEARVEGEGQ HFYGYRGKRS VEWDLNDWKW DGDLFIATPL NPGVSQTMGR QFFPLGNSSN
61 SSSSCSEEGN GNVTREVEKR RRAAAAAATG EDGNNNGGLS LKLGENGYDL NGEREGKKTK
121 LGGGSGTTHR SVCQVESCEA DLSKVKDYHR RHKVCEMHSK ATSALVAGIM QRFCQQCSRF
181 HVLEEFDEGK RSCRRRLAGH NKRRRKTNPE PAANGNPLSD DNQSSNYLLI CLLKILSNMH
241 SNGSSDHQDL MPHLLKSLVS HAGEQLGKNL VELLLQGGSG LLAAPQEDSK QAPEIPRQEL
301 YANGNRSEKL QTKVNDFDLN DIYIDSDDGT DLERSSPPTT TTNPATSSPD YPSWIHQTSR
361 NSDSASDQSP SSSSEDAQMR TGRIVFKLFG KEPNDFPPVL RGQILDWLSH TPTDIESYIR
421 PGCIVLTIYL RQAETAWEEL SDDMGFSLSK LLDLSDDPLW TSGWIYVRMQ NQYAFVFDGQ
481 VVVDTSLPLR SYDHSHIISV RPLAVAATGK AQFTVKGINL RRPGTRLLCA VGGKYLIQEN
541 DDLKESNECV SFSCDLPITS GRGFMEIEDQ GGLSSSFFPF IVVEEDDVCS EIRILETTLE
601 FTDTDSAKLA MEFIHELGWL LRRSKLGVFS LARFKWLIEF SMDREWCAVI RKLLNMFFEG
661 AVGDSSSDAA ALSELCLLHR AVRKNSKPMV EMLLRYVVPN QQRIHSLFRP DAAGPAGLTP
721 LHIAAGKDGS EDVLDALTED PSMVGIEAWR TSKDTTGFTP EDYARLRGHF SYIHLIQRKI
781 NKKSATEDHV VVNIPASSIS DREQKETKSG SSALEITHGN HKLQCKLCDH KLVYGTARQS
841 VAYRPAMLSM VAIAAVCVCV ALLFKSCPEV LYVFQPFRWE LLDYGTR
//