LOCUS RID49459.1 999 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-274
PROTEIN_ID RID49459.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H00258"
/db_xref="Phytozome:Brara.H00258"
intron_pos 167:2 (1/23)
intron_pos 209:1 (2/23)
intron_pos 241:0 (3/23)
intron_pos 316:0 (4/23)
intron_pos 346:1 (5/23)
intron_pos 363:2 (6/23)
intron_pos 385:2 (7/23)
intron_pos 436:1 (8/23)
intron_pos 460:0 (9/23)
intron_pos 525:0 (10/23)
intron_pos 538:0 (11/23)
intron_pos 574:0 (12/23)
intron_pos 604:0 (13/23)
intron_pos 629:1 (14/23)
intron_pos 661:2 (15/23)
intron_pos 685:0 (16/23)
intron_pos 744:0 (17/23)
intron_pos 785:0 (18/23)
intron_pos 813:0 (19/23)
intron_pos 874:2 (20/23)
intron_pos 921:0 (21/23)
intron_pos 941:0 (22/23)
intron_pos 965:0 (23/23)
BEGIN
1 MYSRLIRKNQ RLSCFVLKQD KCLAKPPTRD FTGSPSYRLT NPLTNHFTRK HPSYFLIASG
61 NSLSLSQNSQ FRRFSSEGDG AGEDNLSKEK TGKEKSVLGG VNRFDSHAQL GKQDQIDWLN
121 NEKLASESKK ESPFLNKRER LKNEFSRRIQ PWETIQLSFE SFPYYLHEHT KDTLVECVSS
181 HIKQRNVAST YGSRLGSSSG RILLQSVPGT ELYRERLVRA LARDSQVPLL ILDSSVLAPY
241 DFADDYNEES ESDDEAAESD DETAESEAEE ETDANNDEEG SSEAKVEGSD DEERYLEISK
301 EVLKKLGADI EDIEKRMSGQ LLGSSEVPKA IAVDHSDKAK RPLKKGDQVR YVGSAKKDEG
361 KRRVVLGKIS TSDGQKSAFT VIPGRPLSKG QRGEVYEVSG NRVAVIFDSG DNKTSEGSEE
421 KPAEQPQTLP IHWVDAKELK LDMDMQAVDG YIAMEALNEV LASNQPLIVY FPDFSQWLSR
481 AVPKARRKEF VDKVQEMFDK LSGPIVMICG QNKIETGSKE KEKFTMVLPN FSQFAKLPLP
541 LKRLTEGLAG SKRSEENEIY KLFTNVMRLH PPKEEDALGL FKKQLGEDRR IVISRSNINE
601 LLKVLEEHEL LCTDLFQVNT DGVILTKQKA EKVIGWARNH YLATCPEPLV KGGRLSLPRE
661 SLEISIARLR KLEDNSLQPS QNLKDIAKDE YERNFVSAVV APGEIGVKFE DIGALENVKK
721 ALNELVILPM RRPELFSRGN LLRPCKGILL FGPPGTGKTL LAKALATEAG ANFISITGST
781 LTSKWFGDAE KLTKALFSYA TKLAPVIIFV DEIDSLLGAR GGSSEHEATR RMRNEFMAAW
841 DGLRSKDSHR ILILGATNRP FDLDDAVIRR LPRRIYVDLP DAENRLKILK IFLTPENLES
901 GFEFDKLAKE TEGYSGSDLK NLCIAAAYRP VQEVLQEEQK GEGADASPCL RPLSLDDFIQ
961 SKAKVSPSVA YDATTMNELR KWNEQYGEGG SRTKSPFGF
//