LOCUS RID49282.1 1811 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-97
PROTEIN_ID RID49282.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H00091"
/db_xref="Phytozome:Brara.H00091"
intron_pos 62:0 (1/34)
intron_pos 118:0 (2/34)
intron_pos 148:0 (3/34)
intron_pos 193:2 (4/34)
intron_pos 224:0 (5/34)
intron_pos 251:2 (6/34)
intron_pos 287:1 (7/34)
intron_pos 338:1 (8/34)
intron_pos 360:0 (9/34)
intron_pos 388:1 (10/34)
intron_pos 414:2 (11/34)
intron_pos 451:0 (12/34)
intron_pos 471:0 (13/34)
intron_pos 510:2 (14/34)
intron_pos 637:0 (15/34)
intron_pos 699:2 (16/34)
intron_pos 724:0 (17/34)
intron_pos 774:1 (18/34)
intron_pos 832:0 (19/34)
intron_pos 947:0 (20/34)
intron_pos 1003:0 (21/34)
intron_pos 1101:0 (22/34)
intron_pos 1160:0 (23/34)
intron_pos 1248:0 (24/34)
intron_pos 1281:0 (25/34)
intron_pos 1342:2 (26/34)
intron_pos 1454:2 (27/34)
intron_pos 1506:0 (28/34)
intron_pos 1543:0 (29/34)
intron_pos 1599:0 (30/34)
intron_pos 1641:1 (31/34)
intron_pos 1694:1 (32/34)
intron_pos 1732:0 (33/34)
intron_pos 1752:0 (34/34)
BEGIN
1 MEGSSSSSLA SKSDGELEEM LDRMLTRLAL CDDSKLEALV SKLLPLTISS LSSQSPAVRN
61 KVLEILSHVN KRVKHHHEIG LPLLELWKLY TDPAASPMVR NFAIVYVEMA FERAPAKERE
121 DIAPKTLENV SKFPQQHQEI ILRIAIKVIG ECHASRISDD VSVKYSTLIA SQDKEIFLDF
181 CLHMLLYQPP PQGGGCPPGL SVFQVNRITG KQELKGDMLT KRKLGILNVI GTMDLPGESV
241 YPLYIAASVD SQEPVAKRGE ELLKKKASVT NLDDPKLIKR LFLLFNGTTA TEHATPEHSV
301 APGNIALKMK LMSGFCRSIA AANSFPATLQ CIFGCMYGSG TTLRLKQMGM EFTVWVFKHG
361 KIDQLKLMGP VILNAILKML DGTGSEADAL SRETKTFSFQ AIGLIAQRLP QLFREKTEMA
421 VRLFNALKLE TQSLRSTIQE AIISLAAAYK DSPEKILKDL EVLLLENSLA EQNEARFCAL
481 RWATSLYDSQ HCPSLYICML SAADMKLDIR ELALEGLFLK EEGRSIVSNH DHKYPKFVEM
541 LEYILKQQPK LLDSSEMRSQ KLLFPSQVYV VMIKFLVKCF EIQMEEINTQ AVGTEFLSSA
601 QRMCLLLEHS LAFEGSAELH ACASKALVSV GSYLPEMVEV YCSQKVVWLR RLLSHTDLST
661 RESASRLLGM ASCALSDAES CSLLSELIAS VSQPPQKLRF EAHHGGLCAV GYVSAHCLYR
721 IPAVSEAVVQ NAVKCLVDVV NSETAPLASV AMEALGHIGI CGPLPLLVND SSPGTQVLEV
781 LQEKLSKLLS GDDIKSVQKI ALSLGHICSN EMSSSHLKIA LDLLFSLSRS KAEEILFAAG
841 EALSFLWGGV PVTADMILKT NYTSLSTDSN FLMREVKSLS KKLSDAKTGD EDSRVTTRET
901 ISGKLFDTLL YSSRKDERCA GTVWMLSLIM YCGQHPSIQL MLPKIQEAFS HLLGDQNELT
961 QELASQGMSI VYELGDSSMK QSLVDALVNT LTGTSKRKRA IKLDEETEVF QEGTIGESPS
1021 GGKISTYKEL CNLANEMGQP DLIYKFMDLA NHQASLNSKR GAAFGFSKIA KQAGDALRPH
1081 LRLLIPRLIR YQYDPDKNVQ DAMAHIWKAL IQDPKKAVDE HLNHIFDDLL VQCGSRLWRS
1141 REASCLALAD IIQGRKFDQV GEHLKRLWIA AFRAMDDIKE TVRNAGDKLC RSVTSLTIRI
1201 CDITLTEISD ARQAMGIVLP FLLSEGIMSK VSSVRKASIA VVMKLAKGAG VALRPHLSDL
1261 VCCMLESLSS LEDQGLNYVE LHAANIGIET EKLENLRISI SKGSPMWETL DLCINIVDTE
1321 SLEQLIPRLT QLVRSGVGLN TRVGVASFIS LLVQKVGTEI KPFTGMLLRL LFPVAKEEKS
1381 SAAKRAFSSA CGVVLKYSSP SQAQSLIEET AALHSGDRSS QIACASLFKS FSSTASDIMS
1441 GHQSAIVPVI FLSRFEDDKQ ISSLFEEVWE DITSGERVTL QLFLQEIVNH ICESITSSSW
1501 ASKKKAGKAI SKLTEVLGES LSPQHNKLLQ CLINEMPGRL WEGKDALLDA LGALSVSCHE
1561 AITKEDPKTP TVILDLICSA CRKKVKKYRE SAFSCLEKVI IAFGDPEFFS AVFPMLYEMC
1621 NTASVKTNSQ VQSASDAVKT ESEKGEDGQV PLEKIMECVK SCIQVATIDD IISRKADLIH
1681 VLLISLSPGF LWNVKMSGIS CLGKLCSRFQ SLWNDSMDGP LPSDATKFAH ELFHSLVPKL
1741 LECINTVKIA QVHVATSQCM LELIEVYSKV STLHPVEVDF KGEINSLIEL EKSEEAKSLL
1801 RKSRDALAIL S
//