LOCUS RID49259.1 882 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-74
PROTEIN_ID RID49259.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H00070"
/db_xref="Phytozome:Brara.H00070"
intron_pos 39:0 (1/18)
intron_pos 93:0 (2/18)
intron_pos 122:1 (3/18)
intron_pos 199:1 (4/18)
intron_pos 255:1 (5/18)
intron_pos 320:0 (6/18)
intron_pos 348:0 (7/18)
intron_pos 388:0 (8/18)
intron_pos 450:1 (9/18)
intron_pos 504:0 (10/18)
intron_pos 528:0 (11/18)
intron_pos 553:2 (12/18)
intron_pos 618:2 (13/18)
intron_pos 643:0 (14/18)
intron_pos 672:0 (15/18)
intron_pos 718:0 (16/18)
intron_pos 785:2 (17/18)
intron_pos 840:0 (18/18)
BEGIN
1 MESQDSDEPM QKKPHLLDPV SPTATAPNSS PSHPVAKSVD ATVLQLQNQK LVQQLDLQKK
61 RMYDVETKIH ELHLNQSSYD DQLISVNRLW NQLVDDLVLL GVRAGANQEA LKYLDIADKK
121 RGSVPPCAAD EMFLCRLLQV DSIGASNSDE VVRKVEEALS LRHSSTVELM GVFENTIATQ
181 RTKAESISQN LQAVKSAEDA TVQLSNINDL MKEEARNLRE MIDALNARHK EQTEQIQAYV
241 SSHSTDQSEL KHLKGELEEI KAELEENRRK LINLKMQKDA ACEGHVTSSP AVANGSVSPE
301 KPVDKTKLRE LKDSIDEIKI VAEGRLSELQ AAQEYNLSLS RQCEDIENEL KDDQYIYSSR
361 LYNLIKEQLH HWNDDVDRYK LLSEAAQAER SFVMRREKDL NQREESLEAA KQKITSVGSR
421 IEVLEQKLQS CIVEKNGLEL ETEEAIQDSE RQDIKREFIT MASTLSKEME MMEAQLKRWK
481 NTAHDALDLR QQAQSLRVSL SNKADEQKGL ENKCAEQMAE IKSLKALIEK LLKEKLELQN
541 LASIYTRECN DERGLAEIKE SQRKAQAQAE ELKNVLDEHF LELRVKAANE TETACQERLA
601 TAKAEIAELR TQLDVSEREV LELKEGIKVK EQEAEALIAE METVGQAYED MQTQNQHLLQ
661 QVAERDDYNI KLVSESVKTK HAYNTHLSEK QVMEKQLQNV NASVETLKAR IAHSEEQMKG
721 CFAEAYKLIQ EDRHLVLSLE TAKGELADAE KEFRWIKSAV SSSEKEYEQI SRRTDEIKLE
781 LDDERSEKKK LEEELMELNK ELEELGSESV EAATLRLQEE VKNCKNILKC GVCFDRPKEV
841 VIMKCFHLFC KQCIQRSLEI RHRKCPGCGT AFGQSDVRVV KM
//