LOCUS RID49234.1 1790 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-49
PROTEIN_ID RID49234.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H00047"
/db_xref="Phytozome:Brara.H00047"
intron_pos 64:1 (1/17)
intron_pos 134:0 (2/17)
intron_pos 190:1 (3/17)
intron_pos 239:1 (4/17)
intron_pos 280:0 (5/17)
intron_pos 317:2 (6/17)
intron_pos 364:1 (7/17)
intron_pos 419:2 (8/17)
intron_pos 741:0 (9/17)
intron_pos 792:0 (10/17)
intron_pos 811:1 (11/17)
intron_pos 856:0 (12/17)
intron_pos 897:2 (13/17)
intron_pos 1012:0 (14/17)
intron_pos 1073:1 (15/17)
intron_pos 1240:1 (16/17)
intron_pos 1748:1 (17/17)
BEGIN
1 MGKFEIIEEV EGDRVGTTDY YFDRIGEPLS IKEEDAQYDL ENPPSQPLAI SERRGLVFIA
61 HSSGFLVGRT KDVIAASKNS DGKGSRVCVQ EIALVDVPVG DVRILSLSAD DSILAASVDA
121 EIHFFSVDSL LKKDAKPSFS YSPDESGFVK DFRWTRKDKH SYLVLSSNGK LFHGTDSAPP
181 KHVMDGVDAV EWSSKGSYIA VAQDNSLRIL SSKFNEKRCI ALSFDSWIGD SDEDCVVKVD
241 SIKWIRQNCI LLGCFQLIDG MEENYLVQVI RSPDGKITDG SSNLVALSFS DLFPCSMDDL
301 VPVGVGPHLL FSYVDQCKLA ITANRKSIDE HIVLLNWSPG DDESAVSVVD IDRETFLPRI
361 GLQENGDDNM IMGLCVDMVS VEGTVNVRSG GDELKELPPF CVLACLTLEG KLVMYNVASV
421 SGLPDSSDVD LASSSDIEDA YAPSVGDDLP GQSSEESEQQ RKFNFSVQNE QKHLNSENSV
481 SLLPTEQRFP KEEISKKETE SVKSSVSGDN NVKQEPYAGK LLQAADGQQS MIPRQFGTSF
541 VQPPSSVGFE TKKFAGFGHI FPVPDKPQKD ISEQSKSMNF QTRFGSKSTP GLFAFSGPQN
601 ASVTPPQNTP AQLWSSGKGV SPPSFGSGLF PSVKDTQQKQ PEQTGTGYVN PPTCIRENPV
661 QAIETTRASA LSILTPPLGQ SQDADEGVEK IDPLPSIRAS QLSLQVKSSF EKSSNHQQHK
721 TPLNAGPLRL EHAMSKQTSN INEMAREMDA LLQSIEGPGG FKDSCTSLLT GHIEELEQGL
781 EILAGKCQTC KIITHEQQGE IQHLLDKTIQ VLAKKTYMEG MYKQTSDDQY WQLWNRRRLN
841 PELEAKRQHI VKLNKDLTHQ LIELERYFNR LELDRYQDDG GLPLSRRGVP NRSAPSRRVQ
901 SLHSLHNTMS SQLAAAEQLS DCLSKQMTFL KIDSPVKKNV KQELFETIGI PYDTSFNSPD
961 AVKANNASSA KNLLLSSIPA SINAQSKQRQ SSGTKSSDPE TARRRRESLD RNWAAFEPPK
1021 TTVKRMLLQE QQKSGTNQPI VSSERLRPKV DTQEQSLLRL KDHASPVVSS NKGIMKSFQQ
1081 NTSEAQSTPF KSTRAMPQSN SPFNHSSASA SKPSFNWSGN KSNSIASYAE ESAPSQSKDT
1141 KTPTVFEQTE KKAGGFKLPE GKANMFPDRS AGSVQRPTGA PVQSQFSFNT NSSMPGNRLT
1201 FPAATVSASS SPLSSTSLDS VSTLPTPSSR SLPTSTKDSV SAPTSIPISL ASVPQTLSVA
1261 PTSTVSATGI SVPFGKSLTS ASLDLNQAAT STPSPSPGPT AGFSFKLPAS SPSSPEIVSS
1321 STGQSSVVPP SSTASQVSTS LVSATSSPTD SNRLFSSTSS SLTPPITSTA PGVFKFPQVS
1381 TPSSAVSTAE PVSEPKKLET QSSSILSTGS TAEPVAKAAT SQTELLPVKS EILTSETTVT
1441 APVSTSGFLS GFSSATQSSP VSMAPPSFSW PGSSQPQQPS PTPVSFPTSF STSASPLGEK
1501 KDTVDTQEDE MDEEAPEASP AAELSMSGFG GFGLGSTPNP AAPKSNPFGG SFGNATTATS
1561 NLFNLTVPSG ELFRPASFSF QNPQPSQPTG FGGFSTTPSQ TPTQGGFGQP SQVGVGQQAL
1621 GSVLGSFGQS RQIGAGLPGA TFGSPTGFGG SSPGSGLPNA PASGGFAAAG SSATGGFAAM
1681 ASTGRGFAGA SSSPTGGFAG LASGSGGFGG AAPGGGAGGG FGGVGSGSGG FGSFAPPNSG
1741 GFAGASGGGG FGGFGGQGQG QGGGGGFSGF GGNTGGAGGK PSELFTQMRK
//