LOCUS RID49188.1 1211 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-3
PROTEIN_ID RID49188.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H00003"
/db_xref="Phytozome:Brara.H00003"
intron_pos 16:2 (1/9)
intron_pos 157:2 (2/9)
intron_pos 178:1 (3/9)
intron_pos 213:2 (4/9)
intron_pos 255:0 (5/9)
intron_pos 282:0 (6/9)
intron_pos 396:0 (7/9)
intron_pos 451:2 (8/9)
intron_pos 732:1 (9/9)
BEGIN
1 MAGSAPEGTQ KKLNQVLEGS KMMEEEYPEE LRTPPVSLVA LFGCAELHSS ITNHLHSQQP
61 PINALAFPDF SHLPLLLLAH RDVINNPTSS SFRDPLSSDS SSSPSAAVPS GGILKRDWLL
121 KHRTKVPALV AAFFPSNHIS GDPTQWLQVC SNLDTLKSVI RPKNIKLVVV VVQSSPHEVI
181 SEDRLLALRK RAELDSKYVL FLNHSELPLS LPRIASAFSD LALSYYREEA RRIKSRIEKR
241 SSTSLDLIVR YCFKVAVYAE FRRDWGEALK FYEDAYHSLH EMIGTSTRLP PIQRLVEIKT
301 IAEQLHFKIS TLLLHGGKLS EAVIWFHQHK SSYDKVVGST EYNFLHWEWM SRQFLVFAEL
361 LETSSATVQN FSSLNQGTAE IPLTEFEFYP AYYYQLAAHY LQNKKSALEL LLSMSVAAQQ
421 IGGSSESITP SVYVGQFSQL REKGEALTLH FITDEEYIRY AISEAKRFQG SFEIVAWLKK
481 SYESFTNLKS RRMAAFCAFE IAREYFGLSD PSNAKFFFDI AANLYRQEGW VSLLWEVLGY
541 LRECSRNLGA LKAFVELSLE MVALPVTSCD DFGNLRDKTY GPGGPATVSR RESIHREVFT
601 LMCRETELIS STEESGFKLA SDSPLHLEID LVSPLRPVLL ASVAFHEQMI KPRALCSITL
661 SLLSHLPLPV EIDHLEVQFN QSTCNFVVRN SQKPLVASPS STVQSGSQVE NEQSLVLVPN
721 NWLRLTYAIK PEQSGKLECL SVLAKLGPRF TICSRAESPA AMEDSPVWKH ENCVQSLPTK
781 DPILAVFGQK ATQVEEPEPQ VDVSLGASGP ALVGENFTMP IVVTSKGHAV HSGELKINLV
841 DVGGGGLFSP REAEPFSLES HHVEICGIDG AEGNDESESE TGNIKKIQQS FGLVSVPDLE
901 EGESWSCKLE IKWHRAKPVM LFVSLGYLPQ GNEANAQKVH IHKSLQIEGK MPLFITNRFM
961 LPYRRDHLLL NRIKPAPDSE DMSSLPLNEK SVLVVSAKNC TEIALKLMCM SIELDDEQGK
1021 TSCLIQQGGG GGETSDSANL APGEEFKKVF TVIPTMRTPK LSLGSVHMKW RRQGDYTEDA
1081 CVSTKHKLAE VNVDASPLVM SLNCPPYAIL GESFTYAITI CNQTQLLQEA KFALADAQSF
1141 VLSGSHSNTV SVLPKSEHVL SYKLVPLTCG QQQLPKITLT SVRYSAEFQP STIASSVFVF
1201 PSAPQANSTA K
//