LOCUS RID49155.1 2373 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-6040
PROTEIN_ID RID49155.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I05615"
/db_xref="Phytozome:Brara.I05615"
intron_pos 34:0 (1/48)
intron_pos 134:1 (2/48)
intron_pos 210:2 (3/48)
intron_pos 318:0 (4/48)
intron_pos 356:0 (5/48)
intron_pos 399:0 (6/48)
intron_pos 464:0 (7/48)
intron_pos 529:0 (8/48)
intron_pos 575:0 (9/48)
intron_pos 616:0 (10/48)
intron_pos 700:2 (11/48)
intron_pos 735:1 (12/48)
intron_pos 767:0 (13/48)
intron_pos 842:0 (14/48)
intron_pos 901:0 (15/48)
intron_pos 925:1 (16/48)
intron_pos 948:0 (17/48)
intron_pos 996:2 (18/48)
intron_pos 1033:0 (19/48)
intron_pos 1082:0 (20/48)
intron_pos 1098:0 (21/48)
intron_pos 1141:0 (22/48)
intron_pos 1219:0 (23/48)
intron_pos 1265:0 (24/48)
intron_pos 1292:2 (25/48)
intron_pos 1328:0 (26/48)
intron_pos 1360:0 (27/48)
intron_pos 1411:0 (28/48)
intron_pos 1466:0 (29/48)
intron_pos 1541:2 (30/48)
intron_pos 1576:0 (31/48)
intron_pos 1619:0 (32/48)
intron_pos 1634:0 (33/48)
intron_pos 1699:0 (34/48)
intron_pos 1741:1 (35/48)
intron_pos 1775:0 (36/48)
intron_pos 1821:0 (37/48)
intron_pos 1849:0 (38/48)
intron_pos 1898:0 (39/48)
intron_pos 1942:0 (40/48)
intron_pos 1958:0 (41/48)
intron_pos 2007:0 (42/48)
intron_pos 2027:2 (43/48)
intron_pos 2079:0 (44/48)
intron_pos 2143:0 (45/48)
intron_pos 2178:0 (46/48)
intron_pos 2223:0 (47/48)
intron_pos 2290:0 (48/48)
BEGIN
1 MLMVPSKVAG HTRFLLESFN GSDVDSIAQE ICQLVDVGIE TSIPALKTCI DCFTVRRSHP
61 NALQLEKLVS LVFKRVLNNS DNLQTLISNA LQDVELTDEF VDDLTNALGF TIPEKISVSL
121 VLADSERSDA KTSGRNLLLA EIEQLCASPG QIESTEQIQN VVLFLQHSED LSSHLDSFLR
181 ILSSAQPRDD FSFALTPFLS PQHHQSYVFS DSSDNDFEAI LDDIDKELDL GDLMGELGCG
241 LTADAQQCKE ILSTFAPLGE AAIARILGNV ARSCPDREDN HTTFPTFALA LGCCIPTELP
301 TPRSWNADIL IETIIQLAPG TSWRKVIENL DHSGFDIPNM ESFSFFMRLY KTACKDPFPL
361 DAVCASVWKN MEGQLSFLKH AIAAPPEVFT FTHSPKKLVY VDNNMHSHEQ QLGLSNQAWL
421 SLDLLYVLCQ LAERGHTVLV SSLLHYPLTH CPKTLLLGMA HIKTAYNLIQ REVLSVVFPL
481 IITNSQDSGF ILHLWHQNAE LVLWGILNAQ NLKVDSILRI IEICHELKIL AVVLESVPVS
541 FSIRLAALAS LRGFLDIENW LPNCLYVYKD TFAVECLKFV KNVHFSQSED FTSKHFHPSD
601 PLSDLHLDAT ALLLKVLKAH DNVITSSQLV DDIEKVNAAI LDCNSKLQNG EAKDSSASNA
661 YGEDVEAEAN AYFHQMFSGQ LSVDAMVQML SLYKDSLVQR EKSIFDCMIA NLFEEYRFFP
721 KYPERQLKIA SILFGSVIKH QLISSITLGM ALRLVLDSLR KPADSKMFLF GSKALEQFVN
781 RLVELPQYCN HILQISHLRS THPELVTVIE QALSRISSGN LESDASVSHP GLSQSFPGNG
841 EFGSGIGQSA LQLPSPVLPQ QTNEVHIDDR SRVPSVPSNE AKPLLPSSSN ISVDVSVTPK
901 NPGISTSSST SAGFVRPARG ATSTRFGSAL NIETLVAAAE RRENAIEAPP SDVQDKISFI
961 INNISLANIE SKGKDFAEIL PQQYYPWFAQ YMVMKRASIE PNFHDLYLKF LDKVDSKLLF
1021 KEILQNTYEN CKVLLGSELI KSSSEERSLL KNLGSWLGKL TIGRNHVLRA REIDPKSLIV
1081 EAYEKGLMIA VIPFTSKVLE PCQNSIAYQP PNPWTMAILG LLAEIYSMPN LKMNLKFDIE
1141 VLFKNLGCDL KEVAPTSLLK DRKREIDGNP DFSNKDLGVT HISQPPIIQE PKTISPLKQI
1201 DLPIDVANTD TPSKLLSQYV APQRVYTNTL MEDEKVATLG LPDQLPSPQG LFPSSPSPLF
1261 STSQPPALPN IGNHVVINQK LSGFGTHFPF PRVVPLAMDR AIKEIVAGIV QRSVCIACQT
1321 TKELVLKDYA LEPDETRIYS AAHLMVASLA GSLAHVTCKE PLRTSISGHL RSLLQDLNIK
1381 NEALEQIVQL VTNDNLDLGC AAIEQAATEK AVQTIDADIA QQLLLRRKPR DGAGSSLSQN
1441 SVSFIPESLR PKPGHLSLSQ QRVYEDFVQL PWQKQSIHTS HGLSAASSSS GEVGLGSNYG
1501 PVSGKSASDS LSGAENARMD MVSRASDLSV EGFESPFALL SSQVDPAGET GGLQFSNSIS
1561 TSELSLVESS DTAMKETGTS LQTLTSAATM ERLGGSNIAQ PSLSTRDALD KYHIVMQKIE
1621 DLVANNAGDG EIQVVVSEVP EIILRCISRD EAALAVAQKA FKALYENASS SLHVSANLAI
1681 LVAIRDVCKR VVKELTSWVI YSEEERKLNK DITIGLIQRE LLNLAEYNVH MAKHLDGGRN
1741 KSATDFSISL LQSLVTEESS VISELHTLVD ALAKLSSKSG SPESLQQLID IIRNPVTNTS
1801 GLSDSASGNE NNDRQSKDEK VVCNTTANTE ENTSWEYVVA DPAAFRNRVS TLFKNWYQIC
1861 EVSGANDTAC SQYVLHLHQT GLLKGDDTTE SFFRILLELS VAHCISSEEI SSGAGQSPQQ
1921 AQSPSFLIID IYAKLVFSVL KYFPEQESSI KLFLLSEIMA VTVRSIQKDA EDKKTSLNPR
1981 PYFRLFINWL LDLCSLDPGT DGANFQVLTA FANAFHALQP LKVPAFSFAW LELVSHRSFM
2041 PKMLTVNGQK GWPYVQRLLV DLLQFLEPFL RNAELGGPVN FLYKGTLRVL LVLLHDFPEF
2101 LCDYHFTFCD VIPSSCIQMR NIILSSFPRN MRLPDPSTPN LKIDLLPEIV EAPCILSEVD
2161 AVLKAKQMKN DVDEYLTLRQ QNSTFLSELK QKLLLSSNEA SSAGTRYNVP LINSLVLYTG
2221 MQAIQQLQAG ETQAQNVVAL HMFKYLSMEL DTEGRYLFLN AIANQLRYPN NHTHYFSFIM
2281 LYLFFESNQE IIIQEQITRV LLERLIVNRP HPWGLLITFI ELIKNPRYGF WQHAFIRCAP
2341 EIEKLFESVA RSCGSLKPVV DEGMVSGWAD NNH
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