LOCUS RID49043.1 751 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-5927
PROTEIN_ID RID49043.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I05509"
/db_xref="Phytozome:Brara.I05509"
intron_pos 30:2 (1/13)
intron_pos 83:2 (2/13)
intron_pos 122:2 (3/13)
intron_pos 151:0 (4/13)
intron_pos 187:1 (5/13)
intron_pos 210:0 (6/13)
intron_pos 252:0 (7/13)
intron_pos 550:2 (8/13)
intron_pos 617:2 (9/13)
intron_pos 638:0 (10/13)
intron_pos 676:0 (11/13)
intron_pos 714:0 (12/13)
intron_pos 744:0 (13/13)
BEGIN
1 MTEPMWSHDQ PSPRSPIPSP SPVANSHRQR CRSVFKLLVQ REISPKTKFV PRKRLGANRC
61 GADSSCGTSK QPVSELGHNL ISWVEAESLH HLSAEYCPLV PPPRSTIAAA FSSDGTTLAS
121 THGDHTVKII DCETGKCLKV LSGHRRTPWV VRFHPRHSEI VASGSLDHEV RLWNAKTSEC
181 IRSHDFYKPI ASIAFHAGGD LLAVASGHKL HIWDYNKRGE DSSPAIVLKT RRSLRAVHFH
241 PHGVPLLLTA EVTDIDSSDS AMSRATSPGY LRYPPPAIFF TNTQSGGRTS MAAELPLVPL
301 PYLVLPSYSA DDPRSQQPAG TTGPRNAQSR FQSNQSSGRT MSPPTLPLAM SGDLAAQAGG
361 RTSTTAVDAM DIDEAQPIGR NRIPSQVLRQ SEQLVHLRDR VSWEVPFLQG WLMAQSQAGA
421 NSGVLSTGSS GQASSTPHIG SSTASLEAAV ASLEIPGGVN LYGASARGDS RDRVSQSRFA
481 GSGLATQQHQ GTDAQPVVNR IPSELASSIA AAELPCTVKL RVWAHDIKDP CAILKSDKCR
541 LTIHHAVLCS EMGAHFSPCG RYLAACVACV LPHGETDPGL QTLVQQDSGL ATSPTRHPVT
601 AHQVMYELRV YSLEKETFGS VLVSRAIRAA HCLTSIQFSP NSEHILLAYG RRHGSLLKSI
661 VSDGETTSHF FTVLEIYRVS DMELVRILPS SEDEVNVACF HPSPGGGLVY GTKEGKLRIF
721 RYNTAVASNL TAPNSSPEKN LTEVQTYALE C
//