LOCUS RID48935.1 1545 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-5820
PROTEIN_ID RID48935.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I05407"
/db_xref="Phytozome:Brara.I05407"
intron_pos 79:1 (1/36)
intron_pos 113:0 (2/36)
intron_pos 143:2 (3/36)
intron_pos 173:0 (4/36)
intron_pos 210:0 (5/36)
intron_pos 261:0 (6/36)
intron_pos 291:0 (7/36)
intron_pos 321:2 (8/36)
intron_pos 363:0 (9/36)
intron_pos 408:0 (10/36)
intron_pos 433:2 (11/36)
intron_pos 464:0 (12/36)
intron_pos 505:0 (13/36)
intron_pos 544:1 (14/36)
intron_pos 672:2 (15/36)
intron_pos 693:0 (16/36)
intron_pos 720:1 (17/36)
intron_pos 737:0 (18/36)
intron_pos 766:0 (19/36)
intron_pos 801:0 (20/36)
intron_pos 832:2 (21/36)
intron_pos 860:0 (22/36)
intron_pos 914:2 (23/36)
intron_pos 956:0 (24/36)
intron_pos 990:2 (25/36)
intron_pos 1027:0 (26/36)
intron_pos 1077:2 (27/36)
intron_pos 1114:1 (28/36)
intron_pos 1154:1 (29/36)
intron_pos 1177:1 (30/36)
intron_pos 1236:2 (31/36)
intron_pos 1274:0 (32/36)
intron_pos 1336:1 (33/36)
intron_pos 1380:0 (34/36)
intron_pos 1397:0 (35/36)
intron_pos 1459:0 (36/36)
BEGIN
1 MASTSGGRGG EDGRPPQMQP VRSLSRRMTR AGTMMMIEPN EDESIIDSEL VPSSLAAIAP
61 ILRVANDIEE DNPRVAYLCR FHAFEKAHKM DPTSSGRGVR QFKTYLLHKL QEEEPTSDPN
121 EIQTYYQNFY VDNIENGEGK KTPEEMAKLY QMATVLYDVL KTVIHPARID EKTHRYAKEV
181 ERKKDHYEPY NILPLDVGGA KTVIMELPEI KAAIRAVCNV QNLPQPRVPS ASTKPNEVDR
241 EKARTFNDIL EWLALVFGFQ RGNVANQREH LILLLANVDV RKRNLENYED VKPSTVNKLM
301 EKYFKNYKSW CNYLRMESYL RFPAGCDEQQ LSLLYIGLYL LIWGEASNVR FMPECLCYIF
361 HNMANEVHGI LFSNVYPVTG ETYEAGAPDD EAFLRNVITP IYQVLRKEVR RNKMGKASHS
421 KWRNYDDLNE YFWDKRCFRL DWPMKPEADF FIHTDVISQR PNERHDPVSH GKRKPKTNFV
481 EARTFWNLYR TFDRMWMFLA LSLQVMIIVA WSPSGSILNI FSEDVFKNVL TIFITSAFLN
541 LLQATLDVIL SFGAWKSLKF TQILRYITKF LMAAMWAIIL PITYSNSLQN PTGLIKFFSS
601 WIGSWLHQSS YNYAIALYVL PNILAAVFFL LPPLRRIMER SNMRIVTFIM WWAQPKLYVG
661 RGMHEEMFAL FKYTFFWVML LLSKLAFSYY VEILPLVKPT RLIWDMTGVN YQWHEFFPNA
721 THNIGVIISI WGPIVLVYFM DTQIWYAIFS TLFGGISGAF SHLGEIRTLG MLRSRFRFVP
781 SAFCGKLTPL PPGHPKRKHL EETVDERDIA RFSQMWNKFV YTMRDEDLIS DRERDLLLVP
841 SSSKDVTVLQ WPPFLLASKI PIALDMAKDF KGKEDIDLFK KIKSEYYMHY AVVEAYESVR
901 DVIYGLLEDE SDKRIVREIC YEIDVSIQQH KFLSKFRMTG MPLLSDKLEK FLKILLSGDE
961 EDDTYKSQII NVLQDIIEII TQDIMVNGHE ILERAHFQSG DIDTDKKEQR FEKINLYKQD
1021 ASWREKVVRL LLLVTVKESA INIPQNLEAR RRMTFFANSL FMNMPDAPRV RDMLSFSVLT
1081 PYYKEDVLYS EEELNKENED GISILFYLQR IYPEEWSNYV ERVIDVKRNF SDKEKTDQLR
1141 EWVSFRGQTL SRTVRGMMYY RMSLELQCYQ EYTGEDDTND GYLSSASNEN FMNRARALAD
1201 LKFTYVVSCQ VYGNQKKSSE GRDRSCYNNI LQLMLKYPSL RVAYIDEREE TVNNKSQKVF
1261 YSVLLKGGNK LDEEIYRIKL PGNPTEIGEG KPENQNHAII FTRGEALQTI DMNQDNYFEE
1321 SFKMRNVLQE FDEGRQQEHL KHTNLRGRVL EILLALRFLL YQYGIVYHLN VAHRDTTLLV
1381 YGLSWAVLLS VLLVLKMVSM GRRKFGTDFQ VMFRILKALL FLGFLSVMTV LFVVCGLTIS
1441 DLCASFLAFL PTGWAILLIG QTLRGVLKGI GIWDSIKELG RAYEYIMGLL IFTPIAVLSW
1501 FPFVSEFQTR LLFNQAFSRG LQISMILAGK KDKETPSFSN KNSIN
//