LOCUS RID48808.1 1322 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-5693
PROTEIN_ID RID48808.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I05292"
/db_xref="Phytozome:Brara.I05292"
intron_pos 101:0 (1/33)
intron_pos 157:0 (2/33)
intron_pos 231:0 (3/33)
intron_pos 252:0 (4/33)
intron_pos 322:0 (5/33)
intron_pos 340:0 (6/33)
intron_pos 360:2 (7/33)
intron_pos 405:0 (8/33)
intron_pos 442:0 (9/33)
intron_pos 474:1 (10/33)
intron_pos 502:0 (11/33)
intron_pos 524:0 (12/33)
intron_pos 576:0 (13/33)
intron_pos 594:2 (14/33)
intron_pos 614:0 (15/33)
intron_pos 651:0 (16/33)
intron_pos 670:0 (17/33)
intron_pos 715:0 (18/33)
intron_pos 800:0 (19/33)
intron_pos 825:0 (20/33)
intron_pos 865:2 (21/33)
intron_pos 890:0 (22/33)
intron_pos 925:0 (23/33)
intron_pos 981:0 (24/33)
intron_pos 1004:1 (25/33)
intron_pos 1055:0 (26/33)
intron_pos 1081:0 (27/33)
intron_pos 1112:0 (28/33)
intron_pos 1158:0 (29/33)
intron_pos 1171:1 (30/33)
intron_pos 1196:0 (31/33)
intron_pos 1242:0 (32/33)
intron_pos 1282:0 (33/33)
BEGIN
1 MPPRKKPKSS ALKTNKQSSS NQSSQPSSVG IQQLFQRHIQ NSQSTSNSLA SNPVVSTPQN
61 PLSRVDEKPD ESKDVDQGGL TEASPEVSRN AKRFKFSPGM LIKQSQDDGG EEITWKISPI
121 DQRLRAAAKQ VPKMMDLTEN SAGFKSSTLR PCSLDKVVQK QCPTSDITSK VEQWLSSPSK
181 KAFKRPALPA NRVTERVITS LDAEFEIVNT SSSGNSPFQT PPSLSCSHNK LPCTVTCSAA
241 CGSTGTGKHK KALLELLDQV EDVISVDDKT ADEVGTVVPQ IRLEEDKICS VGVYNAVDEK
301 PIALLKKNNS ANQDSYFLVL EVSEKRGFAG SSRVQSPYKV LRLLDEHTGK ECALYLWDEW
361 FYSTVSPGDS INVIGDFDGE GKCDVDHQNN FLIVHPDTLV AGTKVAASFG CPRRTVLDER
421 LRSNEHATAA LLGTLLHQVF QAGLTQESPS ADGLQEYASI VIKNNIESLY ACGVHERGVK
481 ATLHEAIPKM LNWIHHFRDS KDSTISNVDF GSTNGQRMVK ISEVIDIEEM SWAPKYGLKG
541 MVDASVRVIV GSDMNTANEK IMPLEFKSGK APNGQASMEH CAQVILYTLL MSERYLKHID
601 NGLLYYLQSD QTQGISVQRS DLVGLIIRRN ELANDILVAS TTQQLPPMLR NPNMCRNCRH
661 LDACTIYHKA DGGNTESSGL ADLFDAHVSH LSTLHFKFIR HWNRLIDLEA REMKLPRKDI
721 AHPRGSKGSD SASYLSSMVL DMKDGFQHHS SHKDSRFIYR FVRQNLSESR ERVPSEDTTR
781 TGRPSADDLD CKLRPGDRVI LRTEVSHLTV ANGIIAEISR THVSVSLSKR LRLPWSEPSS
841 EVSNLSNESW RIYKDEYMTS FSIMRFNLMQ LFIQSVHTIG IRKMIVDLEP PRFDNGSILS
901 QDPAISYIWS EKSLNNDQRQ AILKILTAKD YALILGMPGT GKTSTMVHAV KALLIRGSSI
961 LLASYTNSAV DNLLIKLKAQ GIEFLRIGRD EAVHEEVRES CFSAMDMCSV DEIKTKLDQV
1021 KVVASTCLGI NSPYLVNRRF DVCIIDEAGQ IALPVSIGPL LFASTFVLVG DHYQLPPLVQ
1081 STEARENGMG ISLFRRLSEA HPQAISMLQN QYRMCRGIME LSNALIYGDR LCCGSAEVAN
1141 ATLVLSTSTS NSPWLRKVLE PTRTVVFINT DMLRAFEARD QNAINNPVEA SIIAEIVEEL
1201 VNNGVDSKDI GIITPYNSQA SLIQHAIPTT SVEIHTIDKY QGRDKDCIIV SFVRSREKPR
1261 SSGSSLLGDW HRINVALTRA KKKLIMVGSQ RTLSKVPLLM LLLKKVKEQS GILTLSPGDL
1321 KP
//