LOCUS RID48803.1 722 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-5688
PROTEIN_ID RID48803.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I05288"
/db_xref="Phytozome:Brara.I05288"
intron_pos 8:2 (1/16)
intron_pos 29:2 (2/16)
intron_pos 54:0 (3/16)
intron_pos 76:0 (4/16)
intron_pos 98:0 (5/16)
intron_pos 125:2 (6/16)
intron_pos 143:0 (7/16)
intron_pos 168:0 (8/16)
intron_pos 190:2 (9/16)
intron_pos 207:0 (10/16)
intron_pos 235:1 (11/16)
intron_pos 269:1 (12/16)
intron_pos 286:2 (13/16)
intron_pos 304:0 (14/16)
intron_pos 343:0 (15/16)
intron_pos 546:0 (16/16)
BEGIN
1 MVIPPSSRLN HRTEVDSKEF HAYCFSLANR IDDAIGKDEV PVDVQDLAIT LDHVCQQRCN
61 DQTRAVIMTL MISVKTACRL GWFPQRESQH LLGLVDSMLK DYTSPEDVAS SVNSPISLIP
121 QVMERFYPFF KLGHILVSFE AKAESNILAK DFHISKKMLQ HSPQAKVGLF VFRAEDISKS
181 SCLIHPQEVS FLLNGEGVEK RYNALMEPGP QCPTDVTSLL NLGANLLQTV GCFGGSYFIV
241 IALLDGIPLP VNPSLKDYVH SEVTESNLDC DIIEGPSRIS LSCPISRTRI KLPVKGRVCK
301 HLQCFDFWNY VEINTRIPSW RCPHCNQPVC YTDIRLDQIM IKILEEVGRY ATDVVISADG
361 SWKVLTESNK NVEAVPEATQ GDPNSFQKLT PTVLDLTSDE NEMETSGGTQ FNEHKPCLSE
421 IHNTHTPVMG YPLLNQSSAS VNALPQLPQT FNVFDGQQRF TNFPQVVNRQ DSAAREALYP
481 QDRLATNTTC FHIPMPAAQS SQFQGSHVTP LGHSLGRASG YNHIYDNGIT QTHMPPPLHH
541 QYAMQNQRLH TRRSRSPSPA QERQIPSGIT HHQRLFANYG GTSYQRLMQR PVQRLNPVGA
601 GQQFPWRELT NMNRMRGSLT PGSTGYEHMI IQPTRPVHAP AQTLAQPQTT AYNYIPAQAQ
661 VQTLPPPQPT SYHSMADEIQ AFLAHPSYPN GNTGTQARTG SLPVEEGVGP TGLLWSMPPE
721 AW
//