LOCUS RID48267.1 1017 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-5152
PROTEIN_ID RID48267.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I04790"
/db_xref="Phytozome:Brara.I04790"
intron_pos 6:2 (1/14)
intron_pos 61:2 (2/14)
intron_pos 145:1 (3/14)
intron_pos 175:1 (4/14)
intron_pos 209:0 (5/14)
intron_pos 248:0 (6/14)
intron_pos 275:1 (7/14)
intron_pos 298:0 (8/14)
intron_pos 318:0 (9/14)
intron_pos 359:2 (10/14)
intron_pos 426:0 (11/14)
intron_pos 463:0 (12/14)
intron_pos 497:0 (13/14)
intron_pos 909:2 (14/14)
BEGIN
1 MSPVTRQNKP KTRSSSSSSL PQDRENRNLS HYLLLSHSFF NCFYRRSETI LYSSLPLQFC
61 LEVTMRTPGT PVSKTDRTQA VTPGGSSSRS REEKIVVTVR LRPLNKKELL ARDQVAWQCV
121 DSHTIVSKPQ APQERSHHQS SFTFDKVFGP ESFTEDVYED GVKNVALSAL MGINATIFAY
181 GQTSSGKTYT MRGVTEKAVN DIYNHIIKTP ERDFTIKISG LEIYNENVRD LLNSESGRAL
241 KLLDDPEKGT VVEKLVEETA NNDQHLRHLI SICEAQRQVG ETALNDTSSR SHQIIRLTIQ
301 STHRENSDCV RSYMASLNFV DLAGSERASQ SQADGTRLRE GCHINLSLMT LTTVIRKLSV
361 GKRCGHIPYR DSKLTRILQH SLGGNARTAI ICTLSPASTH AEQSRNTLYF ANRAKEVTNN
421 AQVNMVVSDK QLVKHLQKEV ARLEAERRTP GPSTEKDFKI QQMEMEMEEL RRQRDDAQIQ
481 LEELRQKLQG DQQQDKGLNP FESPDPPARK CLSYSAALTP SAENKTLNRN ERARKTSIRQ
541 SMIRQSSTAP FTLMHEIRKL EHLQEQLGEE ATKALEVLQK EVACHRLGNQ DAAQTIAKLQ
601 AEIREMRTVR SSTDVITLNK SVSANLKEEI TRLHSQGSTI ANLEEQLDKL VMSLPSNIKA
661 GDETPKTKTH HHSKKKKLLP LTPSSLSSRQ SFLKSPCSPL SSSKQVLDYD AENKAPQENN
721 SSATTPQETP QKGEESGDFS SKESTPLGYR RSSSVNMKKM QLMFQNAAEE NVRSIRAYVT
781 ELKERVAKLQ YQKQLLVCQV LELENDGAGY SVENEEKTVE EDEELSQVAW HITFIEEREQ
841 ILELWHVCHV SIIRRTQFYL LFKGDQTDQI YMEVELRRLT WLEQHLAEVG NATPARTGDE
901 SAVVSLSSSI RALRREREFL ARRINSRLTP EEREELYMKW DVPLEGKQRK LQFVNKLWTD
961 PYDSRHVQES AEIVAKLVGF CESGNISKEM FELNFALPSD KRQWNIGWDN ISNLLHL
//