LOCUS RID48182.1 999 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-5067
PROTEIN_ID RID48182.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I04715"
/db_xref="Phytozome:Brara.I04715"
intron_pos 171:2 (1/16)
intron_pos 216:0 (2/16)
intron_pos 241:0 (3/16)
intron_pos 301:1 (4/16)
intron_pos 367:2 (5/16)
intron_pos 397:0 (6/16)
intron_pos 445:0 (7/16)
intron_pos 453:0 (8/16)
intron_pos 477:0 (9/16)
intron_pos 512:2 (10/16)
intron_pos 562:1 (11/16)
intron_pos 636:2 (12/16)
intron_pos 712:0 (13/16)
intron_pos 761:2 (14/16)
intron_pos 868:1 (15/16)
intron_pos 922:0 (16/16)
BEGIN
1 MVTSSSYLIC SNQASLHSEI ALSSSVETVL KRIYGKHNHP PIKAETRRRL SSIPHDLALQ
61 TLSKVFNVEY VKGTLDGFIK YLLDQTVSVY SSPLPCSGES PVLSPRTPGK KCCRKAIVGA
121 EMSLLDYEVP SPKSLKLEVD GGSSLHIPPQ LLALSELEFR KAFLLLSYIP GKNLGQVNIT
181 AEEIRQWKDL SMVAYEAAVW DRLGRHSCPS TDRRVSLQWD SGNTHYYQCH VSPDGSYRFK
241 GPLMENTGTH LHNVLGDENV LTVKFADVPG EATYCNDIYS TYKEIAKNGI MLGLRRYQFF
301 VFKDGGKEEK KKDFSGKGVK CYFIRTDSTA SNDMGKPYIF SGKSIHEARM HFMHVHTLPT
361 LAKYMARFSL ILSKTRKLEV DTSRIAFQQI DDIHCHDQNN NDVLDKNQKP CIHSDGTGYI
421 SEDLARMCPT DIFKGKNVRS DNMQATTYGK EPPLLIQFRM FHYGYAVKGT FLLNKKLPPW
481 TVQVRPSMVK VSEDPALYNF STFNSLEVVT TSNPPRRTKL SRNLVALLSY GGVPDEFFLD
541 ILRSTLEESK TVFDNKRAAV RAARNYGDMD EYNSLQMIMS GIPLDEPHLK DHLSILLNTE
601 KNDLKAGKLL VTESYYLMGT VDPTGKLKQN EVCVILESGQ ISGDVLVYRN PGLHFGDIHV
661 LKATYVKALE EYVGNSKYGV FFPQKGPRSL GDEIAGGDFD GDMYFISRNP KLLEHYKPSE
721 PWVSSSPPSK TYTGRKPSEL SPEMLEEELF RMFLKARFHS SNVIGAAADS WLRIMDQFLT
781 LGDDRVKETA ERKSKMVKTM LKAIDIYYDA LDAPKNGAKV DLPLDLKFDS FPHYMERKNK
841 KNFKSTSILG LIYDTVVSQN EEEPPPCEIK KLQCFEDELV PEFYMVKCSR WYQEYKTEMS
901 QAMDENNKKE SASEVILKYK QEFYGAAGFE ESKKSLEELY LQALALYNIV YDYAIIKNKV
961 RSCGFVWKVA GPVLCKLYLK KAEEKSIPCS VSVLKELWG
//