LOCUS RID48109.1 862 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-4994
PROTEIN_ID RID48109.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I04652"
/db_xref="Phytozome:Brara.I04652"
intron_pos 74:1 (1/12)
intron_pos 104:1 (2/12)
intron_pos 138:0 (3/12)
intron_pos 176:0 (4/12)
intron_pos 203:1 (5/12)
intron_pos 226:0 (6/12)
intron_pos 248:0 (7/12)
intron_pos 289:2 (8/12)
intron_pos 402:0 (9/12)
intron_pos 435:0 (10/12)
intron_pos 652:0 (11/12)
intron_pos 755:2 (12/12)
BEGIN
1 MGAIAGEELK KMDKTQVPVA REEKIMVLVR LRPLNEKEIL ANEAADWECI NDTTVLYRNT
61 LREGSTFPSA YTFDRVYRGE CPTRQVYEDG PKEVALSVVK GINSSIFAYG QTSSGKTYTM
121 TGITEFAVAD IFDYIFKHED RAFVVKFSAI EIYNEAIRDL LSPDNTPLRL RDDPEKGAVV
181 EKTTEEVLRD WNHLKDLISV CEAQRKIGET SLNQKSSRSH QIIKLTVESS AREFLGKENS
241 ATLIASVNFI DLAGSERASQ ALSAGARLKE GCHINRSLLT LGTVIRKLSM GRQGHINYRD
301 SKLTRILQPC LGGNARTAIV CTLSPARSHV EQTRNTLLFA CCAKEVTTKA QINVVMSDKA
361 LVKQLQRELA RLESELRNPA PASSSCDCGV VLRKKDLQIQ KMEKQLVEMT KQRDLAQSRL
421 EDYMRMVEQD ESSKAGTPHF RNRNNKWGDG SVSEASGVVD PDRTSLISDG TSTPLSTARA
481 PLRSHPDEDL EEVLSPDRSG DQSEEYCKEV QCIEVDESAS DIVNNDEERA DAETHLGHSA
541 TANGGTGVAQ NRNPSSVRSV RVRKSWSRGD TAPGTSTPPD ALEIDYPGRP EVHGIAFPEL
601 ESGSGNKLLR NDSMSSRGTD STEAHSVGTP MVGEDGGITS IRSFVEGLKE MVSDPDNSGK
661 MGNDIGLEAM EKEVSGTMTN WAEEFNRQRE QILELWQTCH VSLVHRTYFF LLFTGDQADS
721 IYIGVELRRL SFMKESFSQG NKAFERGQTL TVASSLKALQ RERRMLSKLV GKRFSVEERK
781 RLYEKFGIDV NSKRRRLQLA NQLWSKPKDI THAVDSAAVV AKLVRFVEQG RAMKEMFGLS
841 FTPPLPTTRR SLTWRKSMTT FF
//