LOCUS RID48016.1 1014 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-4901
PROTEIN_ID RID48016.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I04565"
/db_xref="Phytozome:Brara.I04565"
intron_pos 59:0 (1/6)
intron_pos 77:1 (2/6)
intron_pos 726:0 (3/6)
intron_pos 779:0 (4/6)
intron_pos 836:1 (5/6)
intron_pos 936:0 (6/6)
BEGIN
1 MESYLNQNFD VKAKHSSEEV LEKWRNLCGV VKNPKRRFRF TANLSKRYEA AAMRKTNQEK
61 LKIAVLVSKA AFQFISGVSP SDYTVPEEVK AAGYDICADE LGSIVESHDV KKLKFHGGVD
121 GLSGKLKACP NAGLSGESDQ LIQRQELFGI NKFAESELKS FWIFVWEALH DMTLMILGVC
181 AFFSLIVGIA TEGWPQGSHD GLGIVASILL VVFVTATSDY RQSLQFRDLD KEKKKITVQV
241 TRSGFRQKLS IYELLPGDIV HLAIGDQVPA DGLFLSGFSV VIDESSLTGE SEPVMVNAQN
301 PFLLSGTKVQ DGSCKMLVTT VGMRTQWGKL MATLSEGGDD ETPLQVKLNG VATIIGKIGL
361 FFAVVTFAVL VQGMFMRKLS LSTHWRWSGD EALELLEYFA IAVTIVVVAV PEGLPLAVTL
421 SLAFAMKKMM NDKALVRHLA ACETMGSATT ICSDKTGTLT TNHMTIVKSC ICMNVQDVAS
481 KGSSLESDIP EAALKLLRQS IFNNTGGEVV VNKQGKTEIL GTPTETAILE FGLSLGGKFQ
541 EERQSYKVIK VEPFNSTKKR MGVVIELPEG GRVRAHTKGA SEIVLAACQN VINSSGEAVP
601 LDEESIKYLN VTINEFANEA LRTLCLAYMD IENGFSADEG IPASGFTCIG IVGIKDPVRP
661 GVRESVELCR RAGIMVRMVT GDNINTAKAI ARECGILTDD GVAIEGPVFR EKNQEELLEL
721 IPKIQVMARS SPMDKHTLVK QLRTTFDEVV AVTGDGTNDA PALHEADIGL AMGIAGTEVA
781 KESADVIILD DNFSTIVTVA KWGRSVYINI QKFVQFQLTV NVVALIVNFS SACLTGSAPL
841 TAVQLLWVNM IMDTLGALAL ATEPPNNELM KRMPVGRKGN FITNAMWRNI LGQAVYQFVI
901 IWLLQAKGKS LFGLAGSDST LVLNTLIFNC FVFCQVFNEI SSREMEEIDV FKGILDNYVF
961 VVVIGVTVFF QIIIIEFLGT FASTTPLTFV QWFFSIFVGF LGMPIAAGLK KIAV
//