LOCUS RID47369.1 977 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-4254
PROTEIN_ID RID47369.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I03967"
/db_xref="Phytozome:Brara.I03967"
intron_pos 54:0 (1/24)
intron_pos 79:1 (2/24)
intron_pos 102:0 (3/24)
intron_pos 132:2 (4/24)
intron_pos 157:1 (5/24)
intron_pos 172:0 (6/24)
intron_pos 189:1 (7/24)
intron_pos 230:1 (8/24)
intron_pos 268:0 (9/24)
intron_pos 322:1 (10/24)
intron_pos 353:1 (11/24)
intron_pos 382:0 (12/24)
intron_pos 411:0 (13/24)
intron_pos 445:2 (14/24)
intron_pos 480:0 (15/24)
intron_pos 512:0 (16/24)
intron_pos 575:1 (17/24)
intron_pos 596:0 (18/24)
intron_pos 631:0 (19/24)
intron_pos 698:1 (20/24)
intron_pos 809:2 (21/24)
intron_pos 827:0 (22/24)
intron_pos 856:0 (23/24)
intron_pos 897:0 (24/24)
BEGIN
1 MAVGKDNTEV AAAVPMDKGG EILKPRTDKR EYRRIVLKNS LQVLLISDPE TDKCAASMNV
61 SVGSFSDPEG LDGLAHFLEH MLFYASEKYP EEDSYSKYIT EHGGSTNAYT STEDTNYHFD
121 INTDSFDEAL DRFAQFFIKP LMSADATMRE IKAVDSENQK NLLSDSWRMR QLQKHLSRED
181 HPYHKFSTGN MDTLHVQPEA KGIDTRSELI KFYDKHYSAN IMHLVVYGKE SLDKTQCLVE
241 GMFQEIRNTN KSVPRFPGQP CTQDHLQVLV KAVPIKQGHK LTVSWPVTPS IHHYEEAPCM
301 YLGHLIGHEA EGSLFHALKH LGWATSLYAG EADWTMEYSF FDVSVSLTDA GHEHMQDIIG
361 LLFRHIKLLQ QSGVSQWIFD ELSAISEAEF HYQAKIDPIS YVVDISSNMT IYPTKHWLVA
421 SSLPSKFNPE IVQKILNQLS PSNVRIFWKS NNFEGQTDKV EPWYNTAYSF ENITELTIQE
481 WVKSAPDVNL ILPTPNVFIP TDFSLKDVKN KETFPVLLRK TPFSRLWYKP DTKFFKPKAY
541 VNIDFNCPLA FTSPEAAVLS NTFVWLLVDY LNEYAYYAQT AGLDYGLSIS DNGFELYLVG
601 FNHKLRILLE AVMQKIAKFE VKPDRFSVVK ETMTKAYQNY KFQQPYQQAL SYCSLVLQDN
661 TWPWTEELDA LSHLEAEDLA SYVPMLLSRT FVECYIAGNV EKNEAESMVK YIEDVLFSGS
721 KPISRPLFPS QFLTSRVVEL GKGMRYFYHQ EGSNPSDENS ALVHYIQVHQ DEFAMNSKLH
781 LFSLIAKQAT FHQLRTVEQL GYITSLSRSL KAGVYGVQFI IQSSVKGPGH IDSRVESLLK
841 DLESKIYKIS DEEFKSNVTT LIDMKLEKHK NLSDESYFYW EQIQNGTFKF NRRDEEVAAL
901 RELKKEELID FFDEYIKVDA PKKKSLSICV YGSQHVKELA SDKDEVASHF TEIQDIVGFR
961 KSQPLYGSLK GWNQLKL
//