LOCUS RID46849.1 1222 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-3735
PROTEIN_ID RID46849.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I03490"
/db_xref="Phytozome:Brara.I03490"
intron_pos 162:2 (1/5)
intron_pos 545:0 (2/5)
intron_pos 650:0 (3/5)
intron_pos 946:0 (4/5)
intron_pos 1112:2 (5/5)
BEGIN
1 MEEVSSSSKV KVLPLPPQYQ VFVNFRGDEL RYNFVSHLTS ALLRDGVNIF IDTNEEKGKS
61 LNVLFERIEE SRIALALFSV RYTESKWCLN ELLKMKECMD KGQLLIIPIF YKVQAYEVRF
121 QRGRFGYLFN KLRHVDVDKK KQWSEALNSV ADRIGFCFDG KSDENKFIHS IVEKVKQALR
181 KIQLDESKGN SVFLSKNTSL RLGRENNEIY GLKQRLDELE EKFDLDCQET RYLGVVGMPG
241 IGKTTLAREL YETWQCKFVS HVLIQDIRRT SKELGLDCLP ALLLEELLGV RNSDVKSSQG
301 AYESYKSELL KHKVLVVLDD VSDRKQIEVL LGSCDWIRQG SRIVISTSDK SLIQDVVDYT
361 YVVPQLNHKD GLGHFGRYAF DHHSSKHNNE VIMKLSKEFV HYVRGHPLAL KLLGADLNGK
421 DEGYWKTILA TLSQSSCPCI RDVLEESYNE LSQEHKEIFL DMACFRREDE SYVASLLDTS
481 EAAREIKTLI NKFMIDVSDG RVEMHDLLYT FAKEICRRAH AQDGKGGHRL WHHQDIIDVL
541 KNIEEGEKVR GIFLNMNEMK REMSLDSCTF EPMLGLRYLK IYSSGCPEQC RPNNKINLPD
601 GLNFPVEEVR YLHWLEFPLK ELPPDFNPRN LVDLKLPYSK IERIWSDDKD TSKLKWVNLN
661 HSSNLRVLSG LSKAQNLQRL NLEGCTKMET LPHDMQHMRS LLVLNLNGCT SLNSLPEISL
721 VSLETLILSN CSNLKEFRVI SQNLEALYLD GTSVKKLPLD IKILKRLALL NMKGCTKLKE
781 FPDCLDDLKA LKELILSDCS KLQQFPANGE SIKVLETLRL DATGLTEIPK ISSLQCLCLS
841 KNDQIISLPD NISQLYQLKW LDLKYCKSLT SIPKLPPNLQ HFDAHGCCSL KTVSNPLACL
901 TTTQQICSTF IFTSCNKLEM SAKKDISSFA QRKCQLLSDA QNCCNVSDLE PLFSTCFPGS
961 ELPSWLGHEA VGCMLELRMP PHWRENKLAG LALCAVVSFP NSQVQMKCFS VKCTLKIEVK
1021 EGSWIDFSFP VGSLRNQDNV VENTASPEHI FIGYISCSKI FKRLESQHFI SPDPTKSTLS
1081 SKCSPTRASF KFTVTDGTSE IPGLEVLKCG LRFFIGGESS GDCLKKLEVK DAEQNPSAQK
1141 LSDNWTSESD TTTEVAVSPE NANSAEQSPE TVTIAVTASP EKANSAEFQM EISTTPREGQ
1201 PRPYIKTSKW VCFACFDSRK HP
//