LOCUS RID46443.1 1054 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-3328
PROTEIN_ID RID46443.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I03103"
/db_xref="Phytozome:Brara.I03103"
intron_pos 53:0 (1/19)
intron_pos 107:2 (2/19)
intron_pos 146:0 (3/19)
intron_pos 172:0 (4/19)
intron_pos 195:0 (5/19)
intron_pos 221:1 (6/19)
intron_pos 247:0 (7/19)
intron_pos 279:0 (8/19)
intron_pos 326:1 (9/19)
intron_pos 370:1 (10/19)
intron_pos 393:0 (11/19)
intron_pos 482:0 (12/19)
intron_pos 524:0 (13/19)
intron_pos 558:0 (14/19)
intron_pos 607:0 (15/19)
intron_pos 640:0 (16/19)
intron_pos 669:2 (17/19)
intron_pos 712:0 (18/19)
intron_pos 781:0 (19/19)
BEGIN
1 MTDTTDDIAE EISFQSFEDD CKLLGSLFND VLQREVGSDF MEKIERTRVL AQSALNLRLA
61 GIEDTAELLE TQLTSEISNM SLEEALTLAR AFSHFLNLMG IAETHHRVRR VRNLPQLSRS
121 CNDVFSNLLQ SGVSPDELYD TVCKQGVEIV LTAHPTQINR RTLQYKHIRM AHLLEYNDRP
181 DLGLEDRETV IEDLVREITS LWQTDELRRQ KPTPVDEARA GLNIVEQSLW KAVPHYLRRV
241 SSSLKKLTGK PLPLTCTPIK FGSWMGGDRD GNPNVTAKVT KEVSLMSRWM AIDLYIREID
301 SLRFELSMNR CSDGLSRLAD EILEKEIAAQ DDLESWGTNV GRSQPKFPNQ QGLSLPTQLP
361 PRADLPLCAE CGESQYPKLE VPVTDYIPLS RQDVQGISSD GYGPNLQIKT GNGHSVNSNG
421 SQQSITPRGS SSSSSQLLLQ KKLLADSQIG RTSFQKLLEP TPPKRAGIAP YRIVLGEVKE
481 KLLKTRRLLE LLLEGLPCEY DPWDYYETSD QLLEPLLLCY ESLHASDSGV LADGRLADLI
541 RRVATFGMVL MKLDLRQEAA KHSEALDAIT TYLDMGTYSE WDEEKKLEFL TRELKGKRPL
601 VPPNIEVGPE VKEVLDTFRV AAELGSESLG AYVISMASNA SDVLAVELLQ KDARLAVTGE
661 LGRPCPAGTL RVVPLFETVK DLRGAGSVIR KLLSIEWYRE HIEKNHTGHQ EVMVGYSDSG
721 KDAGRFTAAW ELYKAQEDVV AACNEFGIKV TLFHGRGGSI GRGGGPTYLA IQSQPPGSVM
781 GTLRSTEQGE MVQAKFGIPQ TAVRQLEIYT TAVLLATLEP PQPPREEKWR SLMEDISNIS
841 CQNYRSTVYE NPEFLSYFQE ATPQAELGFL NIGSRPTRRK SSTGIGHLRA IPWVFAWTQT
901 RFVLPAWLGV GAGLKGVCEK GHADDLQAMY KEWPFFQSTI DLIEMVLAKA DIPIAKHYDE
961 QLVSESRRGL GSELRKELLT TEKYVLVISG HEKLSENNRS LKKLIESRLP YLNPMNMLQV
1021 EILKRLRRDL DNIKLRDALL ITINGIAAGM RNTG
//