LOCUS RID45587.1 1012 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-2472
PROTEIN_ID RID45587.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I02309"
/db_xref="Phytozome:Brara.I02309"
intron_pos 155:1 (1/4)
intron_pos 306:0 (2/4)
intron_pos 436:0 (3/4)
intron_pos 546:2 (4/4)
BEGIN
1 MMMSNLKLGV DVIGAHNLFP KDGQGTANAF VELYFDGQKH RTTIKDRDLN PVWNESFFFN
61 ISDPSRLHYL TLEAQAYSHN RPTNGRFFLG KVSLPGTSFV PHSDAVVLHF PMEKRGIFSR
121 VRGELGLKVY ITDEASLKSS ATTHPDNLDP SQPTISALKV EHRSDRRHVF YNLPNNAQEH
181 QQQQHPQGPN QPSSSAAEPD NHNEHHQHYV PKHQADEMRP EPAPPSKLIH AHSIASAQPA
241 DFALKETSPN LGGGRVVGGR VIHKDKTARS TYDLVERMYF LYVRVVKARE LPIMDITGSV
301 DPFVEVKVGN YKGITRHFEK RQHPEWNQVF AFAKERMQAS VLEVVVKDKD LLKDDYVGFV
361 RFDINDIPLR VPPDSPLAPQ WYRLEDKKGE KIKGELMLAV WIGTQADEAF SDAWHSDAAM
421 PVDCSPAISA VLRSKVYHAP RLWYVRVNVV EAQDLVPTEK HRFPDVYVKA QLGNQVMKTR
481 PCQARTLGAV WNEDFLFVAA EPFEDHLVLT VEDRVAPGKD EILGRTYIPL NTVEKRADDH
541 MIHSRWYNLE RPVIVDVDQL KREKFSMRIH LRVCLEGGYH VLDESTHYSS DLRPSARPLW
601 RQPIGVLELG ILNAVGLHPM KTREGRGTSD TFCVAKYGQK WVRTRTMVDN LCPKYNEQYT
661 WEVFDPATVL TVGVFDNGQL SEKGNRDVKI GKIRIRLSTL ETGRIYTHSY PLLVLHPSGV
721 KKMGELHMAV RFTCVSFANM LYQYSKPLLP KMHYVRPFSV MQQDMLRHQA VNIVAARLGR
781 AEPPLRKEII EFMSDTDSHL WSMRKSKANF FRMMTVFSGV IAVGKWFSDI CSWRNPITTV
841 LVHVLFLMLV CLPELILPTM FLYMFLIGLW NYRFRPRYPP HMNTKISQAE AVHADELDEE
901 FDTFPTTRNP DLVRLRYDRL RSVAGRIQTV IGDLATQGER FQALLSWRDP RATAIYVIFC
961 FLAAMVFFIT PIQIVVALAG FYMMRHPRFR HRLPSVPVNF FRRLPARTDS ML
//