LOCUS RID45560.1 1221 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-2445
PROTEIN_ID RID45560.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I02283"
/db_xref="Phytozome:Brara.I02283"
intron_pos 166:2 (1/4)
intron_pos 545:0 (2/4)
intron_pos 649:0 (3/4)
intron_pos 1001:0 (4/4)
BEGIN
1 MLQMEMEKPD KLHRIVSPME SLPSSSAELD VFLSFRGFDT RNNFTGHLQK ALRLRGIDSF
61 IDDKLRRGDD LTALFDRIEH SKIAIIVFSK NYSNSAWCLR ELVKILECRD RNQQLVIPIF
121 YKVDKSELKN VPKKSFTEVK EEETSTWEAA LTTAFNISGY VVNEFSTSEA KLVDEIAVDT
181 FKKLNDLAPI GNEGLVGVDS RLGTLEKLLC CDDLDSVHVI GVIGMGGIGK TTLADCLYGR
241 MRGQFDGSCF LTNIRENSSR SGLESLLQKL FSTLLNDREL EIGAPGNAHE RFERRLKSKR
301 LLIVLDDVND EKQIRYLMGH SKWYQGGSRI IITTRDSKLV EAVKGRKYVL PKLNDREALK
361 LFCLNAFNDS CPLKEFQSLT NMVLDYAKGH PLALKVLGSD LCERDNQYWE DKLDRLTSKS
421 HGDIYEVLET SYEELSIEQK NVFLDIACFF RSEKVDYVKS LLNSHSLDVS NVIEDLLDKC
481 LITLSDNRIE MHDMLQTMGK EISLKAETIA IRGSRWLSPH GTQFQSHIRL WDSDYICYLL
541 TKGLGTDMIR GIFLDTSKQG TMRLSAKAFK GMCNLKYLKI YDSRCSRGCE VDCKLLLRKG
601 LDFLPDELTY LHWYGCPLQS LLLNFDPKNL VDLKLPYSEL EDIWDGDKDA GMLKWVDLSH
661 SLRLSRCSGL ANAQNLERLN LEGCTSLKKL PSSMKCLEKL IYLNLRECTS LKNLPKGLKT
721 QSLETLILSG CSSFRKFPMI SENVEVLLLD GTAIKSLPES IESLRKLGML NLKNCKKLKH
781 LSSDLYELKC LQELTLSGCS QLEVFPEIKE AMESLEILLL DDTAITEMPN MMHLRNIKTF
841 SLCGTNSQVS VSMFFLPPPL GCSQLTDLYL SRCGLDKLPD DISGLSLLQS LCLSGNNIEN
901 LPESFNQLHN LKWFDLKYCK MLKSLPTLPQ NLQYLDAHEC ESLETLANPL TPLTVGERIH
961 SLFIFTNCQK LNQDAQECLV GHARVKSQLM ANASVKRYYR GFIPEPLVGI CYPANEIPSW
1021 FCHQRLGHSL EIPLPPHWCD TNFVGLALSV VVSFKDYEDR AKRFSVKCSG KFDNQDGSFT
1081 GFDFTLAGWN EPCGSLSHEP RKLTSDHVFM GYNSCFHVKK LHGESTSCCY TKASFEFYAT
1141 DDERNKKLET CEVVKCGMSL VYVPDDDTCM LLKKTNLVQL STKTEPSCSY GLDDVRLKRG
1201 RCQVGGDEEA DCKRTKEKIL V
//