LOCUS RID45475.1 818 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-2360
PROTEIN_ID RID45475.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I02202"
/db_xref="Phytozome:Brara.I02202"
intron_pos 57:1 (1/15)
intron_pos 70:1 (2/15)
intron_pos 268:1 (3/15)
intron_pos 328:1 (4/15)
intron_pos 350:0 (5/15)
intron_pos 386:0 (6/15)
intron_pos 424:0 (7/15)
intron_pos 456:0 (8/15)
intron_pos 489:0 (9/15)
intron_pos 529:0 (10/15)
intron_pos 564:0 (11/15)
intron_pos 619:0 (12/15)
intron_pos 661:2 (13/15)
intron_pos 688:0 (14/15)
intron_pos 760:2 (15/15)
BEGIN
1 MVVSKANKLS SVFISRIKNS AQSSIPSAAT VKNRDIPGTS QAVKDLLKSK ITSSGTEAPL
61 SDQISSLLHV SSLEKTEDNI LKIPSFNAKI PIDISLRSKE LSRERKERRV YKKNALSRRF
121 AKIFRDSAHK LGTDATFGAF DRVAKEMSVT EYNAMVGVYF ELAEKSHDLE YALDHIGKAF
181 EVLKTMRDRG FQIEESVYGP LLEYLIDMDM VDEFRGFKDV IGETSPGLVE RLGYYEMLLW
241 IQLGDGEKVE ELCGDIDGNG DCLTLLQESY LLALCKREQK DHLQRLFEII DITKVRSSDL
301 LANIFGYLSK FSLDSFARKF LWELRESDEG VKNVSDLISI YSTCTPNLTV EDTILKFNKM
361 HEELDVMPSS TSYEKLVKYS CDSNEVVTAL DVVEKMGEAG VTITADILHS LLHAIDEVLE
421 FNLVRRIHSI MCTNSVKPSS ENFRSMIRLC TRIRDFEGAY NMLGNLKNFN LEPNSSMFNC
481 ILAGYFREKN VCSALMVVKQ MKEAGVKPDS ITYGYLINNC NREDTITKYY NEMKQAGVQA
541 TKRIYKSLID AYAASGQFEK AKQVLLDPDV PARYQNELKS ELISALASHG KRADALILYE
601 EMKETKCQVD PKSIISLIEY CDSNGDLNTL VQLADDLQDD HSWIDGFFRM ILFSVRNRKS
661 SNVLDLLKRN EVRLSKKDIH VEYHFDEVFW AIAETEPTDV KLGMDLLRYI KEELGFVPSR
721 KSLDFLLHAC VNAKDMKNGL LVWKEYQSAA LPCNVLSFLR MYQVLLAAGD LEGAKTFVTK
781 IPKEDKDVQH VIAESQIVYS QTPEKKKPKK KRIVFPTK
//