LOCUS RID45337.1 1270 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-2222
PROTEIN_ID RID45337.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I02076"
/db_xref="Phytozome:Brara.I02076"
intron_pos 24:0 (1/17)
intron_pos 180:0 (2/17)
intron_pos 213:2 (3/17)
intron_pos 455:2 (4/17)
intron_pos 471:0 (5/17)
intron_pos 502:0 (6/17)
intron_pos 520:2 (7/17)
intron_pos 555:0 (8/17)
intron_pos 625:2 (9/17)
intron_pos 647:0 (10/17)
intron_pos 960:0 (11/17)
intron_pos 985:0 (12/17)
intron_pos 1010:0 (13/17)
intron_pos 1135:0 (14/17)
intron_pos 1208:0 (15/17)
intron_pos 1222:0 (16/17)
intron_pos 1243:0 (17/17)
BEGIN
1 MYSSRGSGYG QQPYGSQSGY PQNLGSNYPG SSVSGGAEGG SQIPLSSRLP SGAPQETDIG
61 GGYRSQLSTA SHYGAQYASL YGTASLASSQ PLSTKGVGSS VLDNRSGYVP TLPDSPKYAS
121 GSYLSSSAHG YGQKEDDLYS DKLSGYVPVD RRQSSAYLGR ELQNDPAARY ADSSSFGRQT
181 DLYDRIDQAS LLRGEQLLKM QSLHTTSADG GVRQADYLTE RSSTVRHSDQ EAMHYGRRLE
241 SDPHGLSLHS TSSYASQHTP SLLGAAPRRN LDDYIYMESS SNPGYGVSLP PGRDYGTGKG
301 ILTAASLDLD YPGGMLARGG PRVDDLRKDD RASYLREFEL REEERRRENL RARDKERERE
361 RDRERDRERE REREKEREKQ RARDRERDRI REKEREDERE RDRKRALERK RDRTPTARAT
421 SRDPKERTPV PKAVSRDARS SSLRRDAQHR EASIRRPSPV RPIRRDYVCK VLSSRLVDME
481 RDYVTLDKRY PRLFLPSEFS KVVVNWPKQK LTLSMHTAVS FEHDYIEDGG VDVKPTPTKS
541 SAVKTGGKTV WNAKMILMSG LSRTALEDLS SDKLFEERIP HICNILKFAV LKKDHSLMAT
601 GGPWDPTDGM DPSVDQSSLI TTMLRHTKDK LHLDLSNCRH WNPFLEIHYD RVGTDGVSIF
661 KEITVLFVPD LSECLPSFDA WRTQWLAHRK VLAERDRLLS QEAKKDVIVG KGSDNAGEVA
721 KDAEKKTPGT KKVVKKIVKR VVKRPVNDGK ATDKKDEKPD EKDVPGKVAI SGDNQGESSD
781 PSAKGNEQTP SKTIVKKKII KKVAKKKIAE VDNNMDGDLK NNGENDEEKV VEAEKKTPDS
841 GSMEMKSPAG KKEESASKIV ETKQKAGSPS TEKKEGASSS TKDIKAGEDK KAEKKDKSEN
901 QSEGKKVDEK KAKEKINEKE IKERSGKDES ILQVKDKKKS DEPPRPGFVL QVKRNKDSKL
961 RSLSVSLDSL LDYTDKDIDE SSFELSLFAE SMFEMLQYQM GTRILEFLKK LRVKFVRERN
1021 QRKRRQEELS AKEKEAKAQN KRQKTDKEAT VTTESVPEKD DKKNSAKETV ANTEDTKKAT
1081 GDEAATMEAD IKDEEDEEID EDPEEDPEED PEEDPEECEE MDDENPEQEE TAEEPQKNEE
1141 NSEKTSSAVA RPITEVATDR KEEIVEKTDS KSAEIKPKSE SGKHGKQEEG TSDAPKKEET
1201 VDKELLQAFR FFDRNQTGYV RVDDMRTTMH SLGKFLSHRE VKELVLSALL ESNTGRDDRI
1261 LYNKLVRLSL
//