LOCUS RID44850.1 826 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-1735
PROTEIN_ID RID44850.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I01616"
/db_xref="Phytozome:Brara.I01616"
intron_pos 52:1 (1/17)
intron_pos 82:1 (2/17)
intron_pos 122:0 (3/17)
intron_pos 160:0 (4/17)
intron_pos 187:1 (5/17)
intron_pos 210:0 (6/17)
intron_pos 230:0 (7/17)
intron_pos 277:2 (8/17)
intron_pos 312:0 (9/17)
intron_pos 339:0 (10/17)
intron_pos 362:0 (11/17)
intron_pos 382:0 (12/17)
intron_pos 433:0 (13/17)
intron_pos 528:0 (14/17)
intron_pos 556:0 (15/17)
intron_pos 609:0 (16/17)
intron_pos 692:0 (17/17)
BEGIN
1 MEKICVAVRV RPPTPESSSS ENGSSLWKVE DNRISLHKSL DTPISTASYA FDHVFDERST
61 NACVYELLTK DIIHAAVEGF NGTAFAYGQT SSGKTFTMTG SETDPGIIRR SVRDVFDRIQ
121 MISDREFLIR VSYMEIYNEE INDLLAVENQ RLQIHEHLER GVFVAGLKEE IVSDAEQILK
181 LLDSGEVNRH FGETNMNVHS SRSHTIFRMV IESRGKENSS TDAIRVSVLN LVDLAGSERI
241 AKTGAGGVRL TEGKYINKSL MILGNVINKL SESSKLRAHI PYRDSKLTRI LQPALGGNAK
301 TCIICTIAPE EHHIEESKGT LQFASRAKRI TNCAQINEIL TDAALLKRQK LEIEELRMKL
361 QGSHAEVLEQ EILKLSNQML KYELECERLK TQLEEERGKQ KEQEQCIKEQ QLKIENLNNL
421 VTNSDFKKNQ SEDFINLRRT RDGRCNVNDS SGFPGTPCFE SAEPSFVVAR SKYSELSDFS
481 PMVDSLGDVA DEDTWTKLNK GFVPDLDQLQ FTPAIKRQPT PLIAATTECS RENQKVVDDL
541 KSQIELLTSE KDSLQVKFSE QVGLNNKLMR EISELKEGTL HMKEIPKLLS ESVANCKDVY
601 KDVIVTMKTL MAEKESPTAK LLFGVTGIST SLLSTLESQF SMIMDGQKAG SIVDYPLYDQ
661 WETLRVSLKN TATSLLLDAQ AKDEILNSHD KGQETGVMEE KLKSELSIVK ERYNELEKEL
721 CLDKLLLKAS RESHERLEKE VQFLKEERDS LDVAVSQSTQ RLRVIASDKE NALKDLNVEV
781 KRRKEMEEEI KQISFAFSSR QKSLMSFHNE IKSKMQKLTT QNPKLK
//