LOCUS RID44709.1 1343 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-1593
PROTEIN_ID RID44709.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I01486"
/db_xref="Phytozome:Brara.I01486"
intron_pos 184:0 (1/17)
intron_pos 233:1 (2/17)
intron_pos 259:2 (3/17)
intron_pos 311:0 (4/17)
intron_pos 381:0 (5/17)
intron_pos 463:0 (6/17)
intron_pos 517:1 (7/17)
intron_pos 604:1 (8/17)
intron_pos 645:0 (9/17)
intron_pos 699:0 (10/17)
intron_pos 764:1 (11/17)
intron_pos 810:0 (12/17)
intron_pos 856:1 (13/17)
intron_pos 925:1 (14/17)
intron_pos 1082:2 (15/17)
intron_pos 1155:0 (16/17)
intron_pos 1185:0 (17/17)
BEGIN
1 MSWGLGWKRS SESFRLSLSY GADDLNEDPI RSPSASPFGS PTSVTSSACS SPSAVEDPEL
61 GFRIDLDWTA GDSEDQVALR LESQLMVALP APNDTVVVEF NGEGEEVGVV MRVEKRREPL
121 RAVTLMKAAG SGQQYDGVGV LTRLMRSDMM PAAIPAPAID VASSCGEHWK TVTSLSLSGV
181 GLLVMPVEVT ELPLLEKLCL ENNKLSVLPP ELGKLKNLKV LRVDNNLLIS VPAELRQCVG
241 LVELSLEHNK LIRPLLDFRA MAGLRILRLF GNPLEFLPEI LPLHQLRQLS LVNVRIVSDE
301 NLRSVNVQIE TENTSYFGAS RHKLSAFSPL IFRSSSCHHP LLASTLVKIM QDEGNRSVIG
361 KDENAVRQLI SMITSDNRHV VEQACVALSS LARDVSVAMQ LMKCDIMKPT ETVLKSAAPD
421 EVISVLQVVV TLAFVSDSVS QKMLTKDMLK SLKSLCAHRN PEVQRQALLA VGNLAFCLEN
481 RRILITSESL RELLMRLTVT PEPRVNKAAA RALAILGEND ILRRSIKGRQ VPKQGLRILT
541 MDGGGMKGLA TVQILKEIEK GSGKRIHELF DLICGTSTGG MLAIALGVKL MTLEQCEEIY
601 KNLGKLVFAE PVPKDNEAAS WREKLDQLYK SSSQSFRVVI HGSKHSADEF ERLLKEMCAD
661 EDGDLLIESA VKNVPKVFVV STLVSVMPAQ PFIFRNYQYS VGTPEMSYAF SDHSGGSTLT
721 SSTASDQAGY YKQSAFMGSC KHQVWQAIRA SSAAPYYLDD FSVDSYRWQD GAIVANNPTI
781 FAIREAQLLW PDTKIDCLVS IGSGSVPTRV RKGGWRYLDT GQVLIESACS VERVEEALST
841 LLPMLPEIQY FRFNPVDDRC GMELDETDPA IWLKLEAAID EYIQSNSQVL KNVCERLTLP
901 FLNDEKWCEN LKPRFMNGKQ PNRRESSPSL GWRRNVLLVE AQHSPDSGRV KHHARALESF
961 CSSNGIKLSS LHATPGGPKP SPGTAFPTPF NSPLISGSLP TSPLLFTPDH GPQKFNRIDM
1021 VPPLSLDGGH AGKTILSPPS SPPPKRQLYL PLRQMHEKLQ NLPQVGIIHL ALQNDSNGSI
1081 LSWQNDVFVV AEPGDLADKF LQSVKFSILS VMQSNRRKAA SILSNICSIS DLVRIKKCFQ
1141 VGNIIHRYIG RQTQVMEDDQ EIAAFMFRRT VPSTHLTPDD IRWMVGAWRD RIILYSGTFG
1201 PTQAVVKAFL DSGAKAVIGP STEPQETPLI TSQGSPFEYN IGENGKFEIG EEEDEEEEEA
1261 EREQMEPPTP TATSDWEDSD HEKMNRDDNK CSGLWEDEEE QVSEFVCQLY DMLFRENASV
1321 DVALQKALAS HRKLRYTCHL PNV
//