LOCUS RID44655.1 974 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-1540
PROTEIN_ID RID44655.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I01436"
/db_xref="Phytozome:Brara.I01436"
intron_pos 180:0 (1/8)
intron_pos 330:1 (2/8)
intron_pos 513:2 (3/8)
intron_pos 571:1 (4/8)
intron_pos 689:0 (5/8)
intron_pos 778:2 (6/8)
intron_pos 835:0 (7/8)
intron_pos 889:2 (8/8)
BEGIN
1 MIEGSIPIAL IFRVHYKAMT SAFSSKVKLS RKKRETLLLQ TDLSRSNSVI PRSIQWKVIN
61 LPDEWVLEGA VQPKLPAPQE SIEPNTRLKH IEQYRDGKVK LSFIRNNQDR IDEYLCGSSS
121 NMCESSSNPE TIDLGRVSQL GHDFPREEKS MKFRPRFSTS DIPNSVLRNV NFQSQIPKPQ
181 SRFNSSSVYD WNIDGISEYN ILSFLQKMTM TANSYRTQIG NEDKTVAELL IAGFSGQLKR
241 WWDNYLTNQQ RTEILDSIKT DADNVPILDI LGNPQQDAVA TLVIAITLHF IGDPSVLRDK
301 NAELLSNLKC KKLSDFQWYK NTFLTRVLLH KVRNKIRDSM GTQIIDYDDF TYGELVSIVQ
361 QEGLRLCQDL KLQKHLKWEL KRTKVELGSF CKQFEIDPNQ GSKYCVVDCN KNYYSKNKPR
421 KHSRNYKGFR SRENSWKKPQ NKFPSKKKPF YKDLTFFKCN KRGHTSKFCR FNHKIQELNL
481 GEEISNKIAN LLLNDSSSSY DSDSSVASEK ALRSESNEKN IYVLTKDQEL QLEILNSISD
541 PSLKQKFLEK IISSLNEKDD KNIDNSPKSH DMAPNDFLFV LREITSRKYK IRVTIVFSEN
601 YKIDTIALFD TGADLNYIKS GLVPKCFHLE TKEKLSAANN SKLRITSKAE ASILKENILI
661 KTAFVLTDDI YQNVILGTPF INLITPYKNY STIKKEILSI VLCIQKFQSD LLNKKFLLRI
721 DCKSAKDVLQ KDVKNLASKQ IFARWQTILS IFYFEIEFIK GDSNFVPDFL TREFLQNSAK
781 KEEIPTTPKS LQSPEAIMNQ ILQLQKAFEL SFSKQESGES SKNLPSQAIS KNNEISQTTP
841 SEYFEKHTYQ NIINIEKGFF VNNDPFLTIE KYFGKNNFFK PHNTDKTVFV LQTFLSKKNH
901 TDAAYSTFKI HKIIAPCDWE YDLNDNLNFP DDLKNLPCYN VPFNYWDYCQ AWYNSFLIQS
961 PKHKHTWLIF FDST
//