LOCUS RID44441.1 999 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-1326
PROTEIN_ID RID44441.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I01233"
/db_xref="Phytozome:Brara.I01233"
intron_pos 106:0 (1/5)
intron_pos 574:0 (2/5)
intron_pos 659:0 (3/5)
intron_pos 700:0 (4/5)
intron_pos 860:0 (5/5)
BEGIN
1 MATKLLSLTC IRKERFSGRY PVLWKNLNRP RGGGGGDGSP SETAVLKIDD EEAIASAVFR
61 VTGMTCSACA GSIEKEIKRL PGIHEAVIDA LNNRAQIQFY PSSVNVETIR ETIEDAGFEA
121 SLIENEANER SRQVCRIRIN GMTCTSCSST IESVLQSLHG VQRAHVALAI EEAEVHYDPT
181 LLSCDKLLEE IDNAGFEAVL ISTGEDVSKI DLKIDGEFTD ESMMMIEKSL EALPGVQSVE
241 ISHGSDKISV LYKPDVTGPR NFIRVIESTV FGHSGHIKAT VFSEGGVGRE SQKQEEIKQY
301 YKSFLWSLVF TVPVFLTAMV FMYIPGIKHL LMYNVVNMLT IGEITRWLLA TPVQFIIGWR
361 FYVGSYKALR RGSANMDVLI ALGTNAAYFY SLYTVLRAAT SPDFKGVDFF ETSAMLISFI
421 ILGKYLEIMA KGKTSQAIAK LMNLAPDTAI LLAVDEEGNV TGEEEIDGRL IQKNDVIKIV
481 PGAKVASDGY VIWGQSHVNE SMITGEARPV AKRKGDTVIG GTLNENGVLH VKVTRVGSES
541 ALAQIVRLVE SAQLAKAPVQ KLADRISKFF VPLVIFLSFS TWLAWFLAGK LHWYPEAWIP
601 SSMDSFELAL QFGISVMVIA CPCALGLATP TAVMVGTGVG ASQGVLIKGG QALERAHKVS
661 CIVFDKTGTL TRGKPVVVKT KLLKNMVLRE FYELVAATEV NSEHPLAKAI VEYAKKFRDE
721 EENAAWPEAR DFVSITGNGV RATVNGREIM VGNKNLMSSH KITITADAEE LLAEAEEMAQ
781 TGILVSIDNE LTGVLAVSDP VKPSAREAIS ILKSMNIKSI MVTGDNWGTA NSIAREVGID
841 SVIAEAKPEQ KAEKVKELQA AGHVVAMVGD GVNDSPALVA ADVGMAIGAG TDIAIEAADI
901 VLMKSNLEDV ITAIDLSRKT FSRIRLNYVW ALGYNLMGIP IAAGVLFPST RFRLPPWIAG
961 AAMAASSVSV VCCSLLLKNY KRPKRLDSLA IREVQVERV
//