LOCUS RID44413.1 1460 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-1298
PROTEIN_ID RID44413.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I01205"
/db_xref="Phytozome:Brara.I01205"
intron_pos 29:0 (1/17)
intron_pos 69:1 (2/17)
intron_pos 112:0 (3/17)
intron_pos 125:0 (4/17)
intron_pos 198:0 (5/17)
intron_pos 249:0 (6/17)
intron_pos 281:0 (7/17)
intron_pos 913:0 (8/17)
intron_pos 969:2 (9/17)
intron_pos 992:0 (10/17)
intron_pos 1031:2 (11/17)
intron_pos 1081:1 (12/17)
intron_pos 1169:0 (13/17)
intron_pos 1227:0 (14/17)
intron_pos 1273:0 (15/17)
intron_pos 1363:2 (16/17)
intron_pos 1401:0 (17/17)
BEGIN
1 MEEKCEELEV PMGTLKSISF SISNNKDRKN MSVMEVEAAN QVTDSRLGLP NRDDICKSCG
61 SKDRKVCEGH FGVINLRYPV INPHLLKEVA TLLNKFCPGC KYTKKKQSQS QNPEDRPDRC
121 RYCISNTDYP LMKFRVTTKE AFRRSGIVCE VSEDNVLKLS KRGLSALPPD YWDFMPKDPN
181 IDESCLKPSR RILTHAQVYA LLSGIDERVI RKEIPMFDSL PLASFPVTPN GHRVSEMVTQ
241 FTGPRLVFDE RTRIYKKLVG FEGNGLELSS RVMECMQYSR LFSENVSPSQ ESANPYQKKS
301 DTPELRGLRF MKDVLLGKRS DHTFRTVVVG DPSLKLNEIG IPRSIAERLQ VSENLNDWNR
361 DRLVTSCFHK LLEKGETHVR RGGRLVGIRA IDDLQTGDSF LRTLKDGDTV LMNRPPSIHQ
421 HSLIAMSVKV LPTTSVVSLN PICCLPFRGD FDGDCLHGYV PQSIQAKAEL EELVALDKQL
481 VNRQNGRNLL SLGQDSLTAA YLVNVETNCF LNRAEMQQLQ MYCPFELPRP AIIRGSSTSS
541 EPQWTGKQLF GMLFPPGFEY AYPLNNVVVT NGELLSSSDG SGWLRDGEGN FIQGLMKHDK
601 EKVLDIIFSA QEMLSQWLLN RGLSVSLSDL YFASDTHSRR NLTEEISYGL QEAEQVCNKQ
661 QLMVESRRDF LAVNGEEDTV VADDLELFCY ERQRSATLSK LAVSAFKDAY RDVQALAYRY
721 GDQSNAFLVM SKAGSKGNMG KLAQHSMCIG LQNSSVALSF GFPRKLTCAS WNDPNSPLRG
781 VKGQDRTAHE SFVPFGVVES SFLTGLNPLE SFVHSVTSRD SSFSGNADLP GTLSRKLMFF
841 MRDIYAAYDG TVRNSFGNHL VQFRYESSDD AEEDMTGEAV GSLSACAITE AAYSALDQPI
901 SLLETSPLLN LKNVLECGSK KGLKEQTMSL YMSETLSKKK HGFEYGALDI KRHLEKLCFS
961 EIVSTSMIIF SPRTNTRMPM SSWVCHFHIS KKVLKQNQLD LESVVSSLNK QYANRKKELK
1021 LDVIDLDIQS KNHCSWDDKA MEDDRVCITV TVLEASRHDS LELDAIRLVL IPFLLDSPVK
1081 GYREIKKVDI LWVDRPKAPQ RNKKGLAGEL FLKVTMHGVR GKRSFWSALL ETCLPIMDMI
1141 DWTRSHPDNI RQCCSVYGID AGRSIFLTDL ESAVSDTGKA MLREHLLLVA DALSVTGEFV
1201 ALNPKGWSRQ RQAESAPAPF AQACFSSPSQ CFLKAAKEGV TDELEGSIDA LAWGKVPSFG
1261 TGDQFEIIIS PKNHGFSTPV VDVYGFLSRT ATLPKRKAVR ATSSSLPKSD EFTVQPFPVL
1321 DTALSKAVKT LDGKGLTRSQ LRMIFTWNDM EKLSRSLKRI LYNYEIDATL NELDGRLLMM
1381 ALLFHPNRDE KIGPGFKGIK VANSKHGNAR CFEVVRTDGT TEDFSYHKCV LGATEIIAPK
1441 RVNFYKAKYL RNGTVQPGAV
//