LOCUS RID44196.1 890 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-1081
PROTEIN_ID RID44196.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I01010"
/db_xref="Phytozome:Brara.I01010"
intron_pos 62:0 (1/28)
intron_pos 158:0 (2/28)
intron_pos 188:0 (3/28)
intron_pos 214:0 (4/28)
intron_pos 241:0 (5/28)
intron_pos 258:0 (6/28)
intron_pos 286:2 (7/28)
intron_pos 309:0 (8/28)
intron_pos 328:0 (9/28)
intron_pos 338:0 (10/28)
intron_pos 358:0 (11/28)
intron_pos 396:0 (12/28)
intron_pos 434:0 (13/28)
intron_pos 467:0 (14/28)
intron_pos 509:0 (15/28)
intron_pos 534:0 (16/28)
intron_pos 558:0 (17/28)
intron_pos 595:0 (18/28)
intron_pos 623:0 (19/28)
intron_pos 659:0 (20/28)
intron_pos 693:0 (21/28)
intron_pos 714:0 (22/28)
intron_pos 739:0 (23/28)
intron_pos 763:0 (24/28)
intron_pos 804:2 (25/28)
intron_pos 822:0 (26/28)
intron_pos 845:0 (27/28)
intron_pos 865:0 (28/28)
BEGIN
1 MAATTVWQPL NDGLTEICTL LEQQISPSSA VDKSQIWKQL QHFSQIPDFN NYLVFILVRA
61 EGKSIEIRQA AGLLLKNNLK GAYPSMSQEN QKYIKSELLP CLGAVDRNIR TTVGTIISVI
121 VNIEEGSGWP ELLPALVTCL DSNDLNHMDG AMDALSKICE DIPHVLDSEV PGLAERPINV
181 FLPRLYQFFQ SPHASLRKLA LGCVNQYVII MPSALYNSLD KYLQGLFLLA NDPVAEVRKL
241 VCAAFVHLTE VLPSSIEPHL RNVMEYMLQV NKDPDEEVAL EACEFWSAYC DAQLPSENLK
301 ELLPRLIPVL LSNMAYADDD ESLLDAEEDE SQPDRDQDLK PRFHTSRLHG SDDFDDDDDD
361 SFNVWNLRKC SAAAIDVLSN VFGDEILPAL MPLIQAKLST SGDEAWKERE AAVLTLGAIA
421 EGCFNGLYPH LSEIVAFLLP LLDDKFPLIR SISCWTLSRF GKYLIQEGGN PKGYEQFEKV
481 LMGLLRRLLD SNKRVQEAAC SAFATVEEDA AEELVPHLGV ILQHLMCAFG KYQRRNLRIV
541 YDAIGTLADS VREELNKPAY LEILMPPLVA KWQQLSNSDK DLFPLLECFT SISQALGVGF
601 APFAQPVFQR CMDIIQLQHM AKVDPASAGA QYDREFIVCS LDLLSGLAEG LGSGIESLVS
661 QTNLRDLLLN CCMDEAPDVR QSAFALMGDL ARVFPAYLQP RLIEFLQVAS QQLSTNLIGE
721 NLSVANNACW AIGELAVKVR QEVSPIVTNV VSALALILQH AEAVNKSLVE NSAITLGRLA
781 WIRPDLVAPH MEHFMKPWCL ALSMVRDDLE KEDAFRGLCA VVKVNPSGGV SSLVVICKAI
841 ASWHEIRSED VNSEVSQVLN GYKQMLGNSW AECWSALDPP VKERLARYQV
//