LOCUS RID44101.1 1033 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-986
PROTEIN_ID RID44101.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I00919"
/db_xref="Phytozome:Brara.I00919"
intron_pos 74:0 (1/22)
intron_pos 102:0 (2/22)
intron_pos 131:2 (3/22)
intron_pos 282:0 (4/22)
intron_pos 320:0 (5/22)
intron_pos 354:2 (6/22)
intron_pos 386:0 (7/22)
intron_pos 442:0 (8/22)
intron_pos 468:0 (9/22)
intron_pos 491:0 (10/22)
intron_pos 510:0 (11/22)
intron_pos 583:1 (12/22)
intron_pos 629:0 (13/22)
intron_pos 672:0 (14/22)
intron_pos 696:0 (15/22)
intron_pos 712:0 (16/22)
intron_pos 753:0 (17/22)
intron_pos 775:0 (18/22)
intron_pos 812:2 (19/22)
intron_pos 841:0 (20/22)
intron_pos 927:0 (21/22)
intron_pos 950:0 (22/22)
BEGIN
1 MVIPGLSVLI YVIVSVTTCL SLESVNGVYV KYGTDARVVP DKLNVHLVPH SHDDVGWLKT
61 VDQYFIGSNN SIQKACVRNV MDSVMDSLRR DPNRKFVFAE MAFFTRWWGE QNPETHEQVK
121 KLVNSGQLEF VNGGWSMNDE ATCHYIDMID QMTLGHRFIM QTFNITPRAA WQIDPFGHSS
181 VQAYLMGAEL GFDSLHFARI DYQDREKRKD EKSLEFVWRG SETFASSSQI FTNTFPVHYS
241 PPSGFHYEIT DDYAPLQDDP LLDAFNIKDA VDNFVNASLF YANVTRGNHV MWTMGDDFQY
301 QFAESWFRQM DRLIHYVNKD GRVNAVYSTP SLYVDAKNAA KNITWPLKTH DFFPYADRDS
361 AYWTGYFTSR PAFKRYVRSL SGYYLAARQL EFLVGKKSGG PNTCRLGDAL AIAQHHDGVT
421 GTAKQHVTND YAKRLAHGAS EAEAVVNSAL AHLMNKARTK PDISLAQQCS SMNMSYCPVT
481 EETISGQKSL ILVAYNSLAW NRTEVIRIPV NDAGLNVEDS SGKTLDAQYI PMDNVTSNLR
541 SNYSKAYLGV SSQQIPKYWL VFKATVPPLG WNTFFISKEP GKGSDKNKHS PGTFSPMKGI
601 TEIGPGNLKL VFSQDSGLLK QMHNSRTGAN ILVDQNYLWY ASNVGDSKNS QVSGAYIFRP
661 NASLAYSVSS KPELQIVRGP LVDEVHQQFS PWVSQVIRVY KDKEHAEFEY TIGPLPVGKD
721 YVGKEVITRM VANMSTDKTF YTDSNGRDFL KRVRDNRTDW TLKVNEPIAG NYYPLNLGMY
781 TKDKKVELSV LVDRATGGGS IKDGELELML HRRTCMDDSR GVEESLEETV CINGTCTGLT
841 VRGNYYVSIN TVGGEGARWR RGTGQEIYTP LIMAFTHENK EKWKGSNSVK GNAMDPHYAF
901 PPNVALITLE ELDVGNVLLR LAHLYEAGEE SEYSKVAKVE LKKLFPGKTI KGVKEMSLVA
961 TQEKAKMKEK MKWKVEGEAE QSQSSSHPQK GGPLDSSALV VELAPMEIRT FLLQFSQKQP
1021 AKQQRRRKFI LGF
//