LOCUS RID43502.1 1035 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-387
PROTEIN_ID RID43502.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I00359"
/db_xref="Phytozome:Brara.I00359"
intron_pos 39:0 (1/21)
intron_pos 138:0 (2/21)
intron_pos 221:2 (3/21)
intron_pos 284:1 (4/21)
intron_pos 326:0 (5/21)
intron_pos 338:1 (6/21)
intron_pos 369:0 (7/21)
intron_pos 406:0 (8/21)
intron_pos 448:0 (9/21)
intron_pos 479:1 (10/21)
intron_pos 516:0 (11/21)
intron_pos 549:0 (12/21)
intron_pos 624:0 (13/21)
intron_pos 651:0 (14/21)
intron_pos 675:0 (15/21)
intron_pos 706:1 (16/21)
intron_pos 717:0 (17/21)
intron_pos 745:2 (18/21)
intron_pos 853:2 (19/21)
intron_pos 908:0 (20/21)
intron_pos 960:0 (21/21)
BEGIN
1 MESDDCSVKV AVHIRPLIGD ERLQGCKDCV TVVSGKPQVQ IGSHSFTFDH VYGSTGTPST
61 EMYKECAAPL VDGLFQGYNA TVLAYGQTGS GKTYTMGTGC GDTSQTGIVP QVMNALFTKI
121 ETLKDQIEFQ IHVSFIEIHK EEVQDLLDPS TVNKSDTTSN GKVAHVPGKP PIQIRESSNG
181 VITLAGSTEV SVSTLKEMAA CLDQGSVSRA TGSTNMNNQS SRSHAIFTIT VEQMRKITTD
241 SPENGTCNGS LKEEYLCAKL HLVDLAGSER AKRTGSDGMR FKEGVHINKG LLALGNVISA
301 LGDEKKRKDG AHVPYRDSKL TRLLQDSLGG NSRTVMIACI SPADINAEET LNTLKYANRA
361 RNIRNKPVVN RDPVSSEMIK MRQQLEYLQA ELSLRNGGTS CAELQALKER IASLETTNED
421 LCRELHQYRS RYAGVEHSEK DFKDIQADEI VGSVRPDGLK RSLHSIESSN YPMVEATIGD
481 SREIDEEAKE WEHKLLQNSM DKELHELNRR LEEKESEMRL FDGYDPAALK QHFGKKIAEV
541 EDEKRAVQEE RNRLLAEIEN LASDGQAQKL QDVHAQNLKS LEAQIQDLKK KQESQVQLLK
601 QKQKSDDAAR RLQEEIQSIK AQKVQLQHRM KQEAEQFRQW KASREKELLQ LRKEGRKSEY
661 ERHKLQALNQ RQKMVLQRKT EEAAMATKRL KELLEARKSS PREHSGGTNG FGTNGQALQR
721 WLDHELEVMV NVHEVRHEYE KQSHVRAALA EELSVLRQVD EFAAKGLSPP RGKNGGFARA
781 SSLSPNARMA RISSLENMLG ISSNSLVAMA SQLSEAEERE RAFTSRGRWN QLRSMGEAKN
841 LLQYMFNSLA ETRCQVWEKD VEIKEMKDQF KEIVGLLRQS ELRRKEAEKE LKLREQELAT
901 SLASSPLGTP PSSVKHLAEG MNNTPSPMTV PAQKQLKFTP GIANGKVRDS AAFINANKKM
961 VPIGQVSMRK LSAVGQQSGK LWRWKRSHHQ WIVQFKWKWQ KPWRLSEWIR HSDETLLKAK
1021 PRHKALPNKI TNKIM
//