LOCUS RID43056.1 800 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-3139
PROTEIN_ID RID43056.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J02892"
/db_xref="Phytozome:Brara.J02892"
intron_pos 97:2 (1/13)
intron_pos 151:0 (2/13)
intron_pos 189:0 (3/13)
intron_pos 215:0 (4/13)
intron_pos 259:0 (5/13)
intron_pos 333:0 (6/13)
intron_pos 394:0 (7/13)
intron_pos 415:0 (8/13)
intron_pos 450:2 (9/13)
intron_pos 500:2 (10/13)
intron_pos 554:0 (11/13)
intron_pos 686:0 (12/13)
intron_pos 762:0 (13/13)
BEGIN
1 MMSVRAINGC FIIRTATTGA APPVSLFRHR IQRLRSSHLR EFSKLGFGFP LLRQNTGGGD
61 APSCSSCIHS LVESVSQELE SVSRRKRSRL SVRASVKVKL TSYGEVVEDK LVNQELEAGL
121 LLEFKKDPER VLLAVTHRPD GKKNWMVFDQ NGVSSSIKPQ QITYIVPGVY NFDHTGLTDF
181 LHRAQDNLDT QLLEFAWMEL LEKNKPVTPE ELAEIIYGRS DPLESYCAHF LLSKDEIYFS
241 VLESKGSRSI YSPRRTEQVE ELLRRQRVKE AEEREFEEFI QLLKSAKNAP SHTKPPKSSW
301 LANDKVRENI DSLKAYAIDA WASIDQRKLA GVILKSMGLQ KTAVSALNLL IDIGYFPVHV
361 NLDLLKLNLP TDHSDAIVEA AEILLSESSD LDAARRIDLT HLKVYAIDVD EADELDDALS
421 ATRLQDGRIK IWIHVADPAR YVTPGSKVDR EARRRGTSVF LPTATYPMFP EKLAMEGMSL
481 RQGETCNAVS VSVVLRSDGS IAEYSVENSI IRPTYMLTYE SAAELLHMNL QEEVELRLLS
541 EAAFLRSQWR HEQGAVDTTT LETRIKVVNP EDPEPLINLY VENQADPAMR LVFEMMILCG
601 EVIATFGSQH NIPLPYRGQP QSNIDVSAFA HLPEGPVRSA SIVKVMRAAE MNFRCPVRHG
661 VLGIPGYVQF TSPIRRYMDL TAHYQIKAFL RGGDNFPFSA GELEGIAASV NMQNRVVRKL
721 CNSGLRYWVI EFLRRQQKGK KYTALILRFV KDRIASLLLV EVGFQATAWV SEGKQVGDEV
781 EVRVEEAHPR DDLILLKEVL
//