LOCUS RID43015.1 853 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-3097
PROTEIN_ID RID43015.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J02852"
/db_xref="Phytozome:Brara.J02852"
intron_pos 187:1 (1/11)
intron_pos 216:2 (2/11)
intron_pos 285:0 (3/11)
intron_pos 321:0 (4/11)
intron_pos 376:0 (5/11)
intron_pos 573:0 (6/11)
intron_pos 595:0 (7/11)
intron_pos 622:0 (8/11)
intron_pos 654:2 (9/11)
intron_pos 725:0 (10/11)
intron_pos 745:1 (11/11)
BEGIN
1 MRDLVIVFPS SSLITNPHHH HHNHRRRYAT APEHNRKTKY TSSLTKQLPS LSSANHLSNH
61 FPDAVRWTPD GSVEYYADFA SKLAEDGRIQ DVALIAETLA AESGANAARF ASMVDSDLLS
121 KGIALNLRQG KVESVVYTLK RIEKVGIAPL DLVNDDSSVK LMRKQFRAMA NSVQVEKAID
181 LMEILAGFRF KIKDLVDPFD VIKICVDISN PQLALRYACL LPHTEILLCR IILGFGKKGD
241 MASVMTAYEA CKQILDAPNM YIYRTMIDVC GLCGDYVKSR YIYEDLLKED IKPNIYVMNS
301 LMNVNSHDLG YTLKVYKNMQ KLNVTADMTS YNILLKTCCL AGRVDLAQDI YKEAKRMESS
361 GLLKLDAFTY CTIIKVFADA KMWKMALKVK EDMQSVGVTP NTHTWSSLIS ACANAGLVEQ
421 ANHLFEEMLA SGCEPNSQCF NILLHACVEA CQYDRAFRLF QSWKGSSAKE ALYADDIISK
481 GGVFNPNKLN HHGPGSLVKS NSSPYIQASN RFFFKPTTAT YNILLKACGT DYYRGKELMD
541 EMKSLGLAPN QITWSTLIDI CGGSGDVEGA VRILRTMHSD GTRPDVVAYT TAIKICAENK
601 SLKLAFSLFE EMRRFQIKPN WVTYNTLLKA RSKYGSLLEV RQCLAIYQDM RKAGYKPNDH
661 FLKELIEEWC EGVIQENSQS QNKASDLEGT DFGRPVSLLI EKVASHLQER TSGHLAIDLQ
721 GLTKVEARLV VLAVLRMIKE DYTRGDVVKD DLVIILGTGE ANTDSGKQEV AVKDALVKLL
781 KDELSLVVLP AGQRRVLDIT QDARFVDDAD QNTEHTSENT KSIVGMSTTR RPAILERLMV
841 TKASLHKWLQ RKK
//