LOCUS RID42878.1 1040 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-2961
PROTEIN_ID RID42878.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J02734"
/db_xref="Phytozome:Brara.J02734"
intron_pos 162:0 (1/13)
intron_pos 191:0 (2/13)
intron_pos 225:2 (3/13)
intron_pos 242:2 (4/13)
intron_pos 300:0 (5/13)
intron_pos 407:0 (6/13)
intron_pos 475:0 (7/13)
intron_pos 643:0 (8/13)
intron_pos 713:0 (9/13)
intron_pos 776:0 (10/13)
intron_pos 833:2 (11/13)
intron_pos 884:2 (12/13)
intron_pos 912:0 (13/13)
BEGIN
1 MRNSLSFEID DNGGAGRDGN HNRLRLKPIS SGDRRDRSSH SGLDRSSLLR SSNTARPHHI
61 GGRSLNRKGV ISWLKPRGNW LLYFLVAFTV CAFVMSSVLL QDSIAWQGSA RGGGGVRRRI
121 GFGSSLKYVP GGVARRLIEG EGLDSLRLGV RIGVRPPRLA LILGNMKKDS RTLMLVTVMK
181 NLQKLGYVFK VFAVENGEAR SLWEQLAGHV KVLVSDQLGL ADWTIFEGVI ADSLEAKEAI
241 SSLMQEPFRS VPLIWIVHED ILANRLPVYL KIGQNSLISH WRSAFARANA VVFPQFTLPM
301 LHSVLDVGNF VVIPESVVDV WAAESYSEVH TKQELREING FGEDDLVIMV LGSSFFYDEF
361 SWDNAVAMHM LGPLLTRYGR RKDTGGSFKF VFLYGNSTEG QNDAVQEVAS RLGLTQGTVR
421 HFGLNEDVNR VLLMADILVY ASSQEEQSFP PLIVRAMSFG IPIITPDFPV MKKYMADGVH
481 GIFFQRNDPD ALLKAFSPLI SDGRLSKFAQ TIASSGRLLT KNMMAAECTT GYARLLENIV
541 HFPSDTFLPG SISQLQVTSW EWSLFRSEIG QPKSFIQDST YASIRPGIVF QVEEKFTGVV
601 ESTNPVDNNT IFLSDELPSK LDWDVLEEIE GAEEYEKVES EELEDRMERD VEDWEEIYRN
661 ARKSEKLKFE VNERDEGELE RTGQPLCIYE VYDGAGAWPF LHHGSLYRGL SLSSKDRRLS
721 SDDVDAADRL PLLNDSHYRD ILCEIGGMFS VATKVDSIHM RPWIGFQSWR AAGRKVSLSS
781 KAEGSLENII QQDTKGEIVY FWTKLDIDGG ALGSRNALTF WSMCDIINQG NCRTTFEEAF
841 RHMYGLPEHI EALPPMPEDG HHWSSLHNWV MPTPSFLEFV MFSRMFSESL DALHNNPNDS
901 QSCSLASSQL ERKHCYCRVL ELLVNVWAYH SGRKMVYINP RDGSLEEQHP LPQRRGLMWA
961 KYFNFTLLKS MDEDLAEAAD DNDHPRERWL WPLTGEVHWK GVYEREREER YRLKMDKKRK
1021 TKEKLYDRIK NGYKQKSLGG
//