LOCUS RID42843.1 1156 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-2926
PROTEIN_ID RID42843.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J02700"
/db_xref="Phytozome:Brara.J02700"
intron_pos 79:0 (1/17)
intron_pos 130:2 (2/17)
intron_pos 160:0 (3/17)
intron_pos 238:0 (4/17)
intron_pos 270:0 (5/17)
intron_pos 333:0 (6/17)
intron_pos 386:1 (7/17)
intron_pos 430:0 (8/17)
intron_pos 487:0 (9/17)
intron_pos 578:0 (10/17)
intron_pos 643:0 (11/17)
intron_pos 711:0 (12/17)
intron_pos 734:1 (13/17)
intron_pos 784:0 (14/17)
intron_pos 887:0 (15/17)
intron_pos 907:0 (16/17)
intron_pos 995:0 (17/17)
BEGIN
1 MRFTKRISFF LWQATKLPTR SLPRNPSLCR SYHIVGAPIS SGDVVKGLSY GQIRRRFIGY
61 TAEQFSDDEY ECEFEEHKAS SSVANVDEWK WKLGILLAND SEREIVSRDK RDRRDYEQIS
121 NLAKRMGLYS EIYGKVVVAS KVPLPNYRPD LDDKRPQREV VLPLSLQRRV EGLLQEHLDR
181 QQLNSGKANE SEADSQPPKQ TEELPDESSD AFLDGSVMEK VLQRRSMRMR NMQRAWQESP
241 EGRTMLEFRK SLPSFKDKER LLQAIARNQV IVVSGETGCG KTTQLPQYIL ESEIESGRGA
301 FCNIICTQPR RISAMAVAER VSAERGEPLG ETVGFKVRLE GMRGKNTQLL FCTSGILLRR
361 LLSDRNLNGI THVFVDEIHE RGMNEDFLII VLKELLPRRP DLRLVLMSAT LNAELFSNYF
421 GGAPTIHIPG FTHPVKAHFL EDVLEMTGYK LTSFNQVDDY GQEKTWKTQK QLMPRKRKNQ
481 ITSLVEEALS KSTFESYSSR TRDSLSSWMP DCVGFNLIEA VLCHICRKER PGAVLVFLTG
541 WDDISSLRDQ IKAHPLLGDP NRVLLLMCHG SMATAEQRLI FERAPPNIRK IVLATNMAEA
601 SITINDVVFV VDCGKAKETT YDALNNTPCL LPSWISQASA RQRRGRAGRL LPGECYHLYP
661 KCVYEAFSEY QLPELLRTPL NSLCLQIKSL QVESIAGFLS AALQAPEPLT VQNAIGFLKM
721 IGALDEKENL TDLGKLLSIL PVDPKLGKML IMGAIFHCFD PILTIVSGLS VRDPFLLPQE
781 KKDLALSAKL RFSAKDYSDH MALVRAFEGW KNAEREGSAY EYCWRNFLSA QTLQAIHSLR
841 KQFNYILKEA GLVHDDSALN NKLSHNQSLV RAVICSGLFP GIASVVHRET SMSFKTMDDG
901 QVSLYANSVN SRFPTIPYPW LVFGEKVKVN AVLIRDSTGV PDSSLILFGG ALSTGVQVGH
961 LKMLDGYIDF FMDPNLADSY VKLKEELNKL LQKKLEDPSV DIHKEGKYLM LAVQELVAGD
1021 QCEGRFVFGR DTKRPSQPQL AGENNKLSKD GTNPKSLLQT LLMRAGHSPP KYKTKHLKTN
1081 EFRALVEFKG MQFVGKPQRN KTLAEKDAAV EALAWLTHTS DNSTDQYSGD ADSPPDVTDN
1141 MLKLLGGKRR RRSKGK
//