LOCUS RID42597.1 963 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-2680
PROTEIN_ID RID42597.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J02470"
/db_xref="Phytozome:Brara.J02470"
intron_pos 31:1 (1/16)
intron_pos 260:0 (2/16)
intron_pos 334:0 (3/16)
intron_pos 497:2 (4/16)
intron_pos 583:2 (5/16)
intron_pos 622:0 (6/16)
intron_pos 646:0 (7/16)
intron_pos 679:0 (8/16)
intron_pos 693:0 (9/16)
intron_pos 720:0 (10/16)
intron_pos 737:0 (11/16)
intron_pos 800:0 (12/16)
intron_pos 824:0 (13/16)
intron_pos 863:0 (14/16)
intron_pos 886:0 (15/16)
intron_pos 908:1 (16/16)
BEGIN
1 MSLFRKYFYR KAPDRLVEIS ERVYGITTLT SFDCCFSSDV MGEDKYKQYL DGIVAQLHYL
61 YPDTSFKVCN FRAEDQQGQI STLLSQYGMS VMDYPNQHES IPLLPLQVIS QFLISSESWL
121 GQQNVLLMHC ERGCLPLLDF MLSAVLLYNK RYHGDQKTLE LAYNQAPKEL LCLSSALNPQ
181 PSQLRYLGYI STRDLGSDWP PPEAPLVLDC LILRGLPHFE GVKDWRPSLR ILGQDHKAPT
241 NRSSILLFST PKTNTFYQQE ECIQVKLDIQ CHVQGDIVLE LINLHDDLVR EEIVFRIMFN
301 TAFVRGNVLK VQSHEMDILW EAKDQFPGEF KAEVLFSDAD PMVPVTERAP PPPPMRRGAP
361 PPPFGSGGPP PPPPPLPFRS REPPPPPPPL MRRGAPPPPP FRSGGPPPPP PPPPPPMLRR
421 APPPPPPPPP PMLRRGPPPP PPPPPPMRRG APPPPPPPPP PPFRSRGPPP FHWVIPRRVF
481 LVSSWEEIPQ RHEEGQTAPE FDVSEIETLL SARVQKPADK APPPPPPPPP PMHRRRGCGL
541 PRPGLRSSTQ KKSSLKPFHW VKITRAARGS LWDEFQRHGE GQTATEFDIS EIETLFSPRV
601 QKPTDKSGNQ PVWAKPEKIQ LINLKKASNV EIILWRLKMP LRDIIAAVLA MDESIVDIDQ
661 IVNLTKFCPT KDEMELLMNY SGDKATLGNC EQYFLELMKV PRVESKLKVF SLKVHFGTQI
721 SELKQRLDLL NSACDEVRSS QKLKEIMKRI DYLGNTNQGS ARGKTIALRS PGVTVGFKLK
781 NLLNVGHSRG ASSMQHLCKD LASKESDLMD FHKDLESLES ASKIQLRSLA QEMQAISKGL
841 EILNQELTAS ERDGPVSEVS HKRLKDFMHI AEIEVRALIR LYTETGRNAD SLLHYFGEDP
901 CRYSFEEVTG TLAKFIRLFK KANEETVEQV ELEKMEAAKE ARMKMAKGAG CNKRKEVDII
961 TDP
//