LOCUS RID42271.1 832 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-2354
PROTEIN_ID RID42271.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J02173"
/db_xref="Phytozome:Brara.J02173"
intron_pos 19:0 (1/21)
intron_pos 31:1 (2/21)
intron_pos 57:0 (3/21)
intron_pos 80:2 (4/21)
intron_pos 107:0 (5/21)
intron_pos 155:1 (6/21)
intron_pos 195:1 (7/21)
intron_pos 221:1 (8/21)
intron_pos 240:0 (9/21)
intron_pos 263:1 (10/21)
intron_pos 292:2 (11/21)
intron_pos 373:0 (12/21)
intron_pos 447:0 (13/21)
intron_pos 549:0 (14/21)
intron_pos 565:2 (15/21)
intron_pos 586:0 (16/21)
intron_pos 614:0 (17/21)
intron_pos 651:0 (18/21)
intron_pos 707:2 (19/21)
intron_pos 730:0 (20/21)
intron_pos 769:0 (21/21)
BEGIN
1 MAASLAAMQR PQVGASNTVY KSGPLFISSK GLGWTSWKKR WFILTRNSLV FFKNDPSVSP
61 QKGGEVNLTL GGIDLNSSGS VVVREDKKLL TVLFPDGRDG RAFTLKAESL EDLYEWKAAL
121 EQALAQAPNA ALVIGQNGIF RTEATNTIEG SFNSWRDQRP LKSSVVGRPI LLALEEIDGS
181 PSFLEKALQF LETYGTKVEG ILRQSADVEE VERRVYEYEQ GNTDFSPEED PHVVGDCVKH
241 VLRQLPSSPV PASCCTALLE AYKIDHKEAR VKSLRSAIVE TFPEPNRRLL LRILKMMHTI
301 TSHSRENRMT SSAVAACMSP LLLRPLLAGE CDLEGFDALE DNSAQLLAAA NAANNAQAIV
361 TSLLEDYGNM INDEGLQRCS TSTDSHIGES GPENSSDEED IEVKRPDLHN VDIEDGQTDD
421 DDDDVMLSRK RSESSGYAGS DLYDYKEYGV EDSDAESPKD IHCSIESTGE FPTRVKRQIE
481 EPFKDIEIAS VSPTENCYQS GREAMPSVNP STPLTAPRYT ASAEKPVNKT AGLSTVSSKR
541 SSPWGRGSGQ KTPAKGSFDG SGNDELLIQR LELMKDELRQ RIAKEAKGNA VLQASLERRK
601 QALHERRLAL EQDVGRLQEQ LQAERDLRSA LEVGLSSSCG HFSSQAADSK TRAELEEIAL
661 AEADVARLKQ KVAELHHQLS QQRHHHLSSL PDAQSHHQFL QNHNTQLKSF QQDFDSILAF
721 VNQERNQRTD ESSLRAEWRN GRANNRQVPG SPRLNEASLG IPMEEFSPVM EYARHEHNNH
781 PPPAASAALM ELTTRLDFFK ERRSQLMQQI HNLDLSYGSS SSVHRSSSPP WN
//