LOCUS RID42220.1 818 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-2303
PROTEIN_ID RID42220.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J02127"
/db_xref="Phytozome:Brara.J02127"
intron_pos 67:1 (1/13)
intron_pos 101:0 (2/13)
intron_pos 142:2 (3/13)
intron_pos 174:0 (4/13)
intron_pos 211:0 (5/13)
intron_pos 250:0 (6/13)
intron_pos 281:0 (7/13)
intron_pos 300:2 (8/13)
intron_pos 315:1 (9/13)
intron_pos 392:0 (10/13)
intron_pos 658:0 (11/13)
intron_pos 675:0 (12/13)
intron_pos 737:0 (13/13)
BEGIN
1 MSASRGGGPD QGPSQPQQRR IMRTQTVGNL GESFDSEVVP SSLVEIAPIL RVANEVESSN
61 PRVAYLCRFY AFEKAHRLDP TSSGRGVRQF KTALLQRLER EHDPTLMGRV KKSDAREMQS
121 FYQHYYKKYI QALQNAADKA DRAQLTKAYQ TANVLFEVLK AVNLTQSIEV DREILEAQDK
181 VAEKTQLYVH YNILPLDPDS ANQAIMRYPE IQAAVLGLRN TRGLPWPEGH KKKKDEDMLD
241 WLQEMFGFQK DNVANQREHL ILLLANVHIR QFPKPDQQPK LDDQALTDVM KKLFKNYKKC
301 KASKVINLSE DIFAGFNSTL REGNVTHHEY IQVGKGRDVG LNQISMFEAK IANGNGEQTL
361 SRDIYRLGHR FDFFRMMSCY FTTVGFYFST LITVLTVYIF LYGRLYLVLS GLEQGLSTQK
421 GIRDNTPLQI ALASQSFVQI GFLMALPMLM EIGLERGFRT ALSEFVLMQL QLAPVFFTFS
481 LGTKTHYYGR TLLHGGAKYR STGRGFVVFH AKFADNYRLY SRSHFVKGLE MMLLLVVYQI
541 FGSAYRGVLA YLLITISMWF MVGTWLFAPF LFNPSGFEWQ KIVDDWTDWN KWINNIGGIG
601 VPAEKSWESW WEEEQEHLRH SGKRGIVVEI LLSLRFFIYQ YGLVYHLTIT ERTKNFLVYG
661 VSWLVIFLIL FVMKTISVGR RKFSASFQLM FRLIKGLIFM TFIAIIVILI TLAHMTIQDI
721 IVCILAFMPT GWGMLLIAQA CKPVVHRAGF WGSVRTLARG YEIVMGLLLF TPVAFLAWFP
781 FVSEFQTRML FNQAFSRGLQ ISRILGGHRK DRSSRNKE
//